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    FLA10 FASCICLIN-like arabinogalactan-protein 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825261, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FLA10
    Official Full Name
    FASCICLIN-like arabinogalactan-protein 10
    Primary source
    TAIR:AT3G60900
    Locus tag
    AT3G60900
    See related
    Araport:AT3G60900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FASCICLIN-like arabinogalactan-protein 10
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    Genomic context

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    See FLA10 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (22499292..22501239, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dihydrodipicolinate synthase 1 Neighboring gene binding protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene beige/BEACH domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115954.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    FASCICLIN-like arabinogalactan-protein 10
    NP_191649.1
    • FASCICLIN-like arabinogalactan-protein 10 (FLA10); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 8 (TAIR:AT2G45470.1); Has 12874 Blast hits to 6768 proteins in 802 species: Archae - 107; Bacteria - 3922; Metazoa - 1175; Fungi - 784; Plants - 2143; Viruses - 697; Other Eukaryotes - 4046 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22499292..22501239 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115954.3 → NP_191649.1  FASCICLIN-like arabinogalactan-protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191649.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94JM1, Q9LZX4
      UniProtKB/TrEMBL
      A0A5S9XMX6
      Conserved Domains (3) summary
      COG2335
      Location:167 → 335
      FAS1; Uncaracterized surface protein containing fasciclin (FAS1) repeats [General function prediction only]
      pfam02469
      Location:198 → 329
      Fasciclin; Fasciclin domain
      pfam15845
      Location:330 → 358
      NICE-1; Cysteine-rich C-terminal 1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZX4.1

    Gene LinkOut

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