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    ZNF652 zinc finger protein 652 [ Bos taurus (domestic cattle) ]

    Gene ID: 511703, updated on 30-Jan-2025

    Summary

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    Official Symbol
    ZNF652provided by VGNC
    Official Full Name
    zinc finger protein 652provided by VGNC
    Primary source
    VGNC:VGNC:37322
    See related
    BGD:BT14487; EnsemblRapid:ENSBTAG00070019041
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZNF652 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (37239583..37307728)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene nerve growth factor receptor Neighboring gene prohibitin 1 Neighboring gene uncharacterized LOC112442651 Neighboring gene phosphoethanolamine/phosphocholine phosphatase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 652

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193118.1 → NP_001180047.1  zinc finger protein 652

      See identical proteins and their annotated locations for NP_001180047.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000019
      UniProtKB/TrEMBL
      F1N440
      Conserved Domains (3) summary
      COG5048
      Location:441 → 490
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:389 → 409
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:457 → 480
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      37239583..37307728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059877932.1 → XP_059733915.1  zinc finger protein 652 isoform X1

      UniProtKB/TrEMBL
      F1N440

    2. XM_005220554.5 → XP_005220611.1  zinc finger protein 652 isoform X1

      See identical proteins and their annotated locations for XP_005220611.1

      UniProtKB/TrEMBL
      F1N440
      Related
      ENSBTAP00070025718.1, ENSBTAT00070042978.1
      Conserved Domains (3) summary
      COG5048
      Location:441 → 490
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:389 → 409
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:457 → 480
      zf-H2C2_2; Zinc-finger double domain

    3. XM_010816131.4 → XP_010814433.1  zinc finger protein 652 isoform X1

      See identical proteins and their annotated locations for XP_010814433.1

      UniProtKB/TrEMBL
      F1N440
      Conserved Domains (3) summary
      COG5048
      Location:441 → 490
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:389 → 409
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:457 → 480
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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