Ift70a2 intraflagellar transport 70A2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ift70a2provided by RGD
Official Full Name: intraflagellar transport 70A2provided by RGD
Primary source: RGD:1560121
See related: AllianceGenome:RGD:1560121
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Ttc30a1; Ttc30a2
Summary: Predicted to enable intraciliary transport particle B binding activity. Predicted to be involved in intraciliary transport. Predicted to be part of intraciliary transport particle B. Predicted to be active in axonemal microtubule. Orthologous to human IFT70A (intraflagellar transport 70A). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: 3q23

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (81306455..81308896, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (60899193..60901634, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (62800932..62803373, complement)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH138121 (e-PCR)
- UniSTS:220208

RH133128 (e-PCR)
- UniSTS:216411

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables intraciliary transport particle B binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in intraciliary transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intraciliary transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in axonemal microtubule	IBA Inferred from Biological aspect of Ancestor more info
located_in axonemal microtubule	IEA Inferred from Electronic Annotation more info
part_of intraciliary transport particle B	IBA Inferred from Biological aspect of Ancestor more info
part_of intraciliary transport particle B	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: intraflagellar transport protein 70A2

Names: TPR repeat protein 30A2; tetratricopeptide repeat domain 30A1; tetratricopeptide repeat domain 30A2; tetratricopeptide repeat protein 30A2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001029918.1 → NP_001025089.1 intraflagellar transport protein 70A2

See identical proteins and their annotated locations for NP_001025089.1

Status: PROVISIONAL

Source sequence(s)

BC098051

UniProtKB/Swiss-Prot

Q4QQS2

UniProtKB/TrEMBL

A0A0H2UHX9, A6HMG5

Conserved Domains (2) summary

sd00006
Location:44 → 74

TPR; TPR repeat [structural motif]

pfam14559
Location:21 → 87

TPR_19; Tetratricopeptide repeat