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Conserved domains on  [gi|71361631|ref|NP_001025089|]
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intraflagellar transport protein 70A2 [Rattus norvegicus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 1.01e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 1.01e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956  18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 101 VA-FLLDNPSFYSRVLRLQAAIKYSEGDLPGARSLVEQLLsgeagedSGGENDPDGLVNMGCLLYKEGHYEAACSKFFAA 179
Cdd:COG2956  98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL-------KLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 180 LQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPELGVGMTTEGIDVRSVGNTV--------VLHQTALVE 251
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLPALPRLAELYEKLGDPEealellrkALELDPSDD 246

                       250       260
                ....*....|....*....|....*
gi 71361631 252 AFNLKAAIEYQLRNFEAAQEALTDM 276
Cdd:COG2956 247 LLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 4.61e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 4.61e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 372 EEAFIKLDGLAGMLTEQLRRL------TKQVQEArhnrddevvIKAVNEYDETLEKYIPVLMAQAKIYWNLENYQMVEKI 445
Cdd:COG2956  96 EELLEKLLELDPDDAEALRLLaeiyeqEGDWEKA---------IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 446 FRKSVEFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEK 525
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALE 240


                ....*.
gi 71361631 526 EEEQLS 531
Cdd:COG2956 241 LDPSDD 246
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 1.01e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 1.01e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956  18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 101 VA-FLLDNPSFYSRVLRLQAAIKYSEGDLPGARSLVEQLLsgeagedSGGENDPDGLVNMGCLLYKEGHYEAACSKFFAA 179
Cdd:COG2956  98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL-------KLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 180 LQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPELGVGMTTEGIDVRSVGNTV--------VLHQTALVE 251
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLPALPRLAELYEKLGDPEealellrkALELDPSDD 246

                       250       260
                ....*....|....*....|....*
gi 71361631 252 AFNLKAAIEYQLRNFEAAQEALTDM 276
Cdd:COG2956 247 LLLALADLLERKEGLEAALALLERQ 271
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-349 2.03e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 2.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631    21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFE-LAAECYEQLSQMHPELEQYRLYQAQAlYKACLYPEAT 99
Cdd:TIGR02917  66 YLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQqVLDELPGKTLLDDEGAAELLALRGLA-YLGLGQLELA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631   100 RVAFLL---DNPSFYSRVLRLqAAIKYSEGDLPGARSLVEQLLSGEAG-----------EDSGGE--------------- 150
Cdd:TIGR02917 145 QKSYEQalaIDPRSLYAKLGL-AQLALAENRFDEARALIDEVLTADPGnvdalllkgdlLLSLGNielalaayrkaialr 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631   151 -NDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPElgvgmt 229
Cdd:TIGR02917 224 pNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET----LQDALKSAPE------ 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631   230 tegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNFEAAQEALTDMPPRAEEELDPVTLHNQALMNMdAKPTEGFEKLQ 309
Cdd:TIGR02917 294 -------------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL-GRVDEAIATLS 353

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 71361631   310 FLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLT 349
Cdd:TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 4.61e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 4.61e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 372 EEAFIKLDGLAGMLTEQLRRL------TKQVQEArhnrddevvIKAVNEYDETLEKYIPVLMAQAKIYWNLENYQMVEKI 445
Cdd:COG2956  96 EELLEKLLELDPDDAEALRLLaeiyeqEGDWEKA---------IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 446 FRKSVEFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEK 525
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALE 240


                ....*.
gi 71361631 526 EEEQLS 531
Cdd:COG2956 241 LDPSDD 246
TPR_19 pfam14559
Tetratricopeptide repeat;
26-87 2.29e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.79  E-value: 2.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 71361631    26 RYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQ 87
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 1.01e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 1.01e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956  18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 101 VA-FLLDNPSFYSRVLRLQAAIKYSEGDLPGARSLVEQLLsgeagedSGGENDPDGLVNMGCLLYKEGHYEAACSKFFAA 179
Cdd:COG2956  98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL-------KLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 180 LQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPELGVGMTTEGIDVRSVGNTV--------VLHQTALVE 251
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLPALPRLAELYEKLGDPEealellrkALELDPSDD 246

                       250       260
                ....*....|....*....|....*
gi 71361631 252 AFNLKAAIEYQLRNFEAAQEALTDM 276
Cdd:COG2956 247 LLLALADLLERKEGLEAALALLERQ 271
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 29-140 2.88e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 2.88e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  29 EAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRV---AFLL 105
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELlerALAL 80

                        90       100       110
                ....*....|....*....|....*....|....*
gi 71361631 106 DnPSFYsRVLRLQAAIKYSEGDLPGARSLVEQLLS 140
Cdd:COG4235  81 D-PDNP-EALYLLGLAAFQQGDYAEAIAAWQKLLA 113
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 11-216 1.41e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.36  E-value: 1.41e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  11 DGEFTAVVYRLIRD----SRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQA 86
Cdd:COG2956  72 DPDRAEALLELAQDylkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA 151

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  87 QALYKACLYPEATRV--AFLLDNPSfYSRVLRLQAAIKYSEGDLPGARSLVEQLLsgeagedsggENDPD---GLVNMGC 161
Cdd:COG2956 152 ELYLEQGDYDEAIEAleKALKLDPD-CARALLLLAELYLEQGDYEEAIAALERAL----------EQDPDylpALPRLAE 220

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 71361631 162 LLYKEGHYEAAcSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHIANIIER 216
Cdd:COG2956 221 LYEKLGDPEEA-LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-145 8.82e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 8.82e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG4783  14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 71361631 101 V--AFLLDNPSFYSRVLRLqAAIKYSEGDLPGARSLVEQLLSGEAGE 145
Cdd:COG4783  94 LleKALKLDPEHPEAYLRL-ARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
26-224 1.53e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 1.53e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  26 RYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRvafll 105
Cdd:COG0457  23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE----- 97

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 106 dnpsFYSRVLRLQAaikysegdlpgarslveqllsgeagedsggeNDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGY 185
Cdd:COG0457  98 ----DYDKALELDP-------------------------------DDAEALYNLGLALLELGRYDEAIEAYERALELDPD 142

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 71361631 186 QPDVSYNLALACYSNRHYAPALKHIANIIERGIRQHPEL 224
Cdd:COG0457 143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 21-107 1.14e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.00  E-value: 1.14e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235


                ....*..
gi 71361631 101 VAFLLDN 107
Cdd:COG3914 236 FEELLAA 242
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 32-329 1.63e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.61  E-value: 1.63e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  32 QLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDnpsFY 111
Cdd:COG3914   1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALL---LL 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 112 SRVLRLQAAIKYSEGDLPGARSLVEQLLSGEagedsggENDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSY 191
Cdd:COG3914  78 AALLELAALLLQALGRYEEALALYRRALALN-------PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 192 NLALACYSNRHYAPALKHianiIERGIRQHPElgvgmttegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNFEAAQE 271
Cdd:COG3914 151 NLGEALRRLGRLEEAIAA----LRRALELDPD-------------------------NAEALNNLGNALQDLGRLEEAIA 201

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 71361631 272 ALTdmppRAeEELDP--VTLHNQALMNM-DAKPTEGFEKLQFLLQQNPFPPETFGNLLLLY 329
Cdd:COG3914 202 AYR----RA-LELDPdnADAHSNLLFALrQACDWEVYDRFEELLAALARGPSELSPFALLY 257
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-349 2.03e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 2.03e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631    21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFE-LAAECYEQLSQMHPELEQYRLYQAQAlYKACLYPEAT 99
Cdd:TIGR02917  66 YLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQqVLDELPGKTLLDDEGAAELLALRGLA-YLGLGQLELA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631   100 RVAFLL---DNPSFYSRVLRLqAAIKYSEGDLPGARSLVEQLLSGEAG-----------EDSGGE--------------- 150
Cdd:TIGR02917 145 QKSYEQalaIDPRSLYAKLGL-AQLALAENRFDEARALIDEVLTADPGnvdalllkgdlLLSLGNielalaayrkaialr 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631   151 -NDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPElgvgmt 229
Cdd:TIGR02917 224 pNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET----LQDALKSAPE------ 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631   230 tegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNFEAAQEALTDMPPRAEEELDPVTLHNQALMNMdAKPTEGFEKLQ 309
Cdd:TIGR02917 294 -------------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL-GRVDEAIATLS 353

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 71361631   310 FLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLT 349
Cdd:TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 15-182 4.73e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.08  E-value: 4.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631    15 TAVVYRLIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACL 94
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631    95 YPEA-----TRVAFLLDNPSfysrVLRLQAAIKYSEGDLPGARSLVEQLLSgeagedSGGENDPDGLVnMGCLLYKEGHY 169
Cdd:TIGR02917 243 FEEAekhadALLKKAPNSPL----AHYLKALVDFQKKNYEDARETLQDALK------SAPEYLPALLL-AGASEYQLGNL 311

                         170
                  ....*....|...
gi 71361631   170 EAACSKFFAALQA 182
Cdd:TIGR02917 312 EQAYQYLNQILKY 324
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 68-216 1.79e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 1.79e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  68 YEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPSFYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGEAgeds 147
Cdd:COG5010  10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP---- 85

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71361631 148 ggeNDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHIANIIER 216
Cdd:COG5010  86 ---NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 16-147 3.30e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 3.30e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  16 AVVYRLIRdsRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLY 95
Cdd:COG3914 119 GNLLLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 71361631  96 PEAT---RVAFLL--DNPSFYSRVLRlqaaIKYSEGDLPGARSLVEQLLSGEAGEDS 147
Cdd:COG3914 197 EEAIaayRRALELdpDNADAHSNLLF----ALRQACDWEVYDRFEELLAALARGPSE 249
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-344 3.64e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 3.64e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  46 AGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRV-AFLLDNPSFYSRVLRLQAAIKYS 124
Cdd:COG2956   9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIhQKLLERDPDRAEALLELAQDYLK 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 125 EGDLPGARSLVEQLLSGEagedsggENDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYA 204
Cdd:COG2956  89 AGLLDRAEELLEKLLELD-------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 205 PALKHianiIERGIRQHPElgvgmttegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNFEAAQEALTDMPPRAEEEL 284
Cdd:COG2956 162 EAIEA----LEKALKLDPD-------------------------CARALLLLAELYLEQGDYEEAIAALERALEQDPDYL 212

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 285 DPVTLHNQALMNMDaKPTEGFEKLQFLLQQNPFPPETFgNLLLLYCKYEYFDLAADVLAE 344
Cdd:COG2956 213 PALPRLAELYEKLG-DPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLER 270
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 21-87 1.06e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 1.06e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQ 87
Cdd:COG4235  61 LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 16-98 1.46e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 1.46e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  16 AVVYRLIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLY 95
Cdd:COG5010  59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138


                ...
gi 71361631  96 PEA 98
Cdd:COG5010 139 DEA 141
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 19-91 1.65e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 1.65e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 71361631  19 YRLIRDSRYSEAVQLLSAELQRSPRSR---AGLSLLAYCYYRLQEFELAAECYEQLSQMHPE---LEQYRLYQAQALYK 91
Cdd:COG1729   1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLE 79
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 4.61e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 4.61e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 372 EEAFIKLDGLAGMLTEQLRRL------TKQVQEArhnrddevvIKAVNEYDETLEKYIPVLMAQAKIYWNLENYQMVEKI 445
Cdd:COG2956  96 EELLEKLLELDPDDAEALRLLaeiyeqEGDWEKA---------IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 446 FRKSVEFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEK 525
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALE 240


                ....*.
gi 71361631 526 EEEQLS 531
Cdd:COG2956 241 LDPSDD 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 410-560 4.70e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 4.70e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 410 KAVNEYDETLE---KYIPVLMAQAKIYWNLENYQMVEKIFRKSVEFCNDHDVWKLNVAHvLFMQENKYKEAIGFYEPIVK 486
Cdd:COG2956  26 KAIDLLEEALEldpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ-DYLKAGLLDRAEELLEKLLE 104

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 71361631 487 KNYDNILsvsaiVLANLCVSYIMTSQNEEAEELMRKIEKEeeqlsygDPDKKIYHlcivnLVIGTLYCAKGNYD 560
Cdd:COG2956 105 LDPDDAE-----ALRLLAEIYEQEGDWEKAIEVLERLLKL-------GPENAHAY-----CELAELYLEQGDYD 161
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
410-542 5.80e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.92  E-value: 5.80e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 410 KAVNEYDETLE---KYIPVLMAQAKIYWNLENYQMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQeNKYKEAIGFYEPIVK 486
Cdd:COG0457  60 EALADYEQALEldpDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL-GRYDEAIEAYERALE 138

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 71361631 487 KNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYGDPDKKIYHL 542
Cdd:COG0457 139 LDPDD-----ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 16-94 5.92e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.59  E-value: 5.92e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  16 AVVYRLIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLY----------- 84
Cdd:COG3071 229 VRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELarlleqlgdpe 308

                        90
                ....*....|
gi 71361631  85 QAQALYKACL 94
Cdd:COG3071 309 EAAEHYRKAL 318
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
54-140 1.13e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.13e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  54 CYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPSFYSRVLRLQAAIKYSEGDLPGARS 133
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                ....*..
gi 71361631 134 LVEQLLS 140
Cdd:COG3063  81 YLERALE 87
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 26-98 1.18e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.60  E-value: 1.18e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 71361631  26 RYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEA 98
Cdd:COG4235  32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEA 104
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 324-523 1.39e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.90  E-value: 1.39e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 324 NLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYLYDFLDAMITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQvqearhNR 403
Cdd:COG3914  20 AAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL------GR 93

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 404 DDEvvikAVNEYDETLE---KYIPVLMAQAKIYWNLENYQMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQeNKYKEAIGF 480
Cdd:COG3914  94 YEE----ALALYRRALAlnpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL-GRLEEAIAA 168

                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 71361631 481 YEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKI 523
Cdd:COG3914 169 LRRALELDPDN-----AEALNNLGNALQDLGRLEEAIAAYRRA 206
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 386-522 1.71e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 386 TEQLRRLTKQVQEARHNRDDEVVIKAVNEYDETLEKYIPVLMAQAKIYWNLENYQMVEKIFRKSVEFCNDHDVWKLNVAH 465
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 71361631 466 VLFMQeNKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRK 522
Cdd:COG4783  81 ALLKA-GDYDEALALLEKALKLDPEH-----PEAYLRLARAYRALGRPDEAIAALEK 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 80-223 1.78e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  80 QYRLYQAQALYKACLYPEATRV--AFLLDNPSfYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGEAgedsggeNDPDGLV 157
Cdd:COG4783   5 EALYALAQALLLAGDYDEAEALleKALELDPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP-------DEPEARL 76

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 71361631 158 NMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPE 223
Cdd:COG4783  77 NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA----LEKALELDPD 138
TPR_19 pfam14559
Tetratricopeptide repeat;
26-87 2.29e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.79  E-value: 2.29e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 71361631    26 RYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQ 87
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 21-76 2.95e-03

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 39.86  E-value: 2.95e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSR-AGLSLL--AYCYYRLQEFELAAECYEQLSQMHP 76
Cdd:COG4105  42 ALEKGDYEKAIKLFEELEPRYPGSPyAEQAQLmlAYAYYKQGDYEEAIAAADRFIKLYP 100
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 16-139 5.51e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 5.51e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  16 AVVYRLIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLY 95
Cdd:COG5010  25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK 104

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 71361631  96 PEATRVAF-LLDNPSFYSRVLRLQAAIKYSEGDLPGARSLVEQLL 139
Cdd:COG5010 105 DEAKEYYEkALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
121-216 5.60e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 5.60e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631 121 IKYSEGDLPGARSLVEQLLSGEAgedsggeNDPDGLVNMGCLLYKEGHYEAAcSKFFAALQASGYQPDVSYNLALACYSN 200
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDP-------DNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLEL 72

                        90
                ....*....|....*.
gi 71361631 201 RHYAPALKHIANIIER 216
Cdd:COG3063  73 GDYDEALAYLERALEL 88
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
21-98 6.36e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 6.36e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAEcYEQLSQMHPELEQYRLYQAQALYKACLYPEA 98
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 21-222 6.57e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.12  E-value: 6.57e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  21 LIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECYEQLSQ---MHPelEQYRLYQAQAlYKACLYPE 97
Cdd:COG3071  95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKhkaLSA--EEAQALERRA-YLGLLRQA 171

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 71361631  98 ATRVAFLLDNPSFYSRVLRLQAAIK--YSE-----GDLPGARSLVEQLLsgEAGEDsggendpDGLVNmgclLYKE---G 167
Cdd:COG3071 172 ARDAEALKALWKALPRAERRDPELAaaYARalialGDHDEAERLLREAL--KRQWD-------PRLVR----LYGRlqgG 238

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*
gi 71361631 168 HYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHP 222
Cdd:COG3071 239 DPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREY----LEAALALRP 289
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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