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    DNA-directed RNA polymerase II-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827099, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA-directed RNA polymerase II-like protein
    Primary source
    TAIR:AT4G14520
    Locus tag
    AT4G14520
    See related
    Araport:AT4G14520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3300W; FCAALL.246
    Summary
    Protein of unknown function homologous to the DNA-directed RNA polymerase II subunit, NRPB7 (At5g59180)
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (8341244..8343262)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene ncRNA Neighboring gene CRM family member 3B Neighboring gene agamous-like MADS-box protein Neighboring gene nuclear factor Y, subunit B3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203800.2
    NM_001340936.1
    NM_001340937.1
    NM_001340942.1
    NM_001340943.1
    NM_117532.4
    NM_179054.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II-like protein
    NP_001190729.1
    • DNA-directed RNA polymerase II-related; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb7-like, N-terminal domain (TAIR:AT4G14660.1).
    NP_193188.2
    • DNA-directed RNA polymerase II-related; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb7-like, N-terminal domain (TAIR:AT4G14660.1); Has 104 Blast hits to 104 proteins in 18 species: Archae - 6; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_849385.1
    • DNA-directed RNA polymerase II-related; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb7-like, N-terminal domain (TAIR:AT4G14660.1); Has 104 Blast hits to 104 proteins in 18 species: Archae - 6; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8341244..8343262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340938.1 → NP_001328618.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    2. NM_001340939.1 → NP_001328617.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    3. NM_001340941.1 → NP_001328615.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    4. NM_001340940.1 → NP_001328616.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    5. NM_001203800.2 → NP_001190729.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190729.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    6. NM_117532.4 → NP_193188.2  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193188.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    7. NM_179054.4 → NP_849385.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849385.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    8. NM_001340942.1 → NP_001328620.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    9. NM_001340943.1 → NP_001328619.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    10. NM_001340936.1 → NP_001328614.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]

    11. NM_001340937.1 → NP_001328613.1  DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23308, Q6NML5
      UniProtKB/TrEMBL
      A0A178UWW9, A0A5S9XSB0
      Conserved Domains (1) summary
      COG1095
      Location:77 → 182
      RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NML5.1

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