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Conserved domains on  [gi|1063722454|ref|NP_001328615|]
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DNA-directed RNA polymerase II-like protein [Arabidopsis thaliana]

Protein Classification

S1 domain-containing protein( domain architecture ID 10645765)

S1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
91-167 2.21e-05

Ribosomal protein S1-like RNA-binding domain;


:

Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 41.05  E-value: 2.21e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063722454   91 GDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHyhyvhsplsedekpHFQKDDLSKIAVGVVVRFQVLAVRFKER 167
Cdd:smart00316   3 GDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSD--------------KRVKDPEEVLKVGDEVKVKVLSVDEEKG 65
 
Name Accession Description Interval E-value
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
91-167 2.21e-05

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 41.05  E-value: 2.21e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063722454   91 GDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHyhyvhsplsedekpHFQKDDLSKIAVGVVVRFQVLAVRFKER 167
Cdd:smart00316   3 GDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSD--------------KRVKDPEEVLKVGDEVKVKVLSVDEEKG 65
 
Name Accession Description Interval E-value
S1 smart00316
Ribosomal protein S1-like RNA-binding domain;
91-167 2.21e-05

Ribosomal protein S1-like RNA-binding domain;


Pssm-ID: 197648 [Multi-domain]  Cd Length: 72  Bit Score: 41.05  E-value: 2.21e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063722454   91 GDILQGTVKKVLWNGAFIRSGPLRYAYLSLLKMPHyhyvhsplsedekpHFQKDDLSKIAVGVVVRFQVLAVRFKER 167
Cdd:smart00316   3 GDVVEGTVTEITPGGAFVDLGNGVEGLIPISELSD--------------KRVKDPEEVLKVGDEVKVKVLSVDEEKG 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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