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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001286495.2 → NP_001273424.1 atos homolog protein A isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is the longest isoform. Variants 2 and 10 encode the same length but different isoforms.
- Source sequence(s)
-
AB037791, AK293920, BC040548
- Consensus CDS
-
CCDS66773.1
- UniProtKB/TrEMBL
-
H0Y3Q9
- Related
- ENSP00000443598.2, ENST00000546305.6
- Conserved Domains (3) summary
-
- pfam13889
Location:1025 → 1082
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:885 → 942
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:477 → 527
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385013.1 → NP_001371942.1 atos homolog protein A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1 and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AC009754, AC025917
- Consensus CDS
-
CCDS45263.1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385014.1 → NP_001371943.1 atos homolog protein A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1 and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AC009754, AC025917
- Consensus CDS
-
CCDS45263.1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385015.1 → NP_001371944.1 atos homolog protein A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1 and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AC009754, AC025917
- Consensus CDS
-
CCDS45263.1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385016.1 → NP_001371945.1 atos homolog protein A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. Variants 1 and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AC009754, AC025917
- Consensus CDS
-
CCDS45263.1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Related
- ENSP00000484641.1, ENST00000619572.5
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385017.1 → NP_001371946.1 atos homolog protein A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) differs in the 5' UTR compared to variant 1. Variants 1 and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AC009754, AC025917
- Consensus CDS
-
CCDS45263.1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385018.1 → NP_001371947.1 atos homolog protein A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) differs in the 5' UTR compared to variant 1. Variants 1 and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AC009754, AC025917
- Consensus CDS
-
CCDS45263.1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385019.1 → NP_001371948.1 atos homolog protein A isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:529 → 765
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1025 → 1082
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:885 → 942
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:477 → 527
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385020.1 → NP_001371949.1 atos homolog protein A isoform 4
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:529 → 765
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1002 → 1059
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:885 → 942
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:477 → 527
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385021.1 → NP_001371950.1 atos homolog protein A isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:955 → 1012
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:821 → 872
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385022.1 → NP_001371951.1 atos homolog protein A isoform 6
Status: VALIDATED
- Description
- Transcript Variant: This variant (13), as well as variant 14, encodes isoform 6.
- Source sequence(s)
-
AC009754, AC025917
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:434 → 670
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:930 → 987
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:790 → 847
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:382 → 432
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_001385023.1 → NP_001371952.1 atos homolog protein A isoform 6
Status: VALIDATED
- Description
- Transcript Variant: This variant (14), as well as variant 13, encodes isoform 6.
- Source sequence(s)
-
AC009754, AC025917
- UniProtKB/TrEMBL
-
H0Y3Q9
- Related
- ENSP00000382153.4, ENST00000399202.8
- Conserved Domains (4) summary
-
- TIGR01612
Location:434 → 670
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:930 → 987
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:790 → 847
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:382 → 432
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
NM_019600.4 → NP_062546.2 atos homolog protein A isoform 1
See identical proteins and their annotated locations for NP_062546.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform 1. Variants 1 and 4-9 all encode the same isoform (1).
- Source sequence(s)
-
AC009754, AC025917
- Consensus CDS
-
CCDS45263.1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Related
- ENSP00000261844.7, ENST00000261844.11
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
RNA
-
NR_104457.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses alternate splice sites at the 5' terminal exon and at an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC009754, AC025917
- Related
-
ENST00000534964.6
-
NR_169533.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169534.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169535.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169536.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169537.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169538.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169539.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169540.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169541.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169542.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169543.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169544.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169545.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169546.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169547.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169548.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
- Related
-
ENST00000562351.2
-
NR_169549.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169550.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754
-
NR_169551.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
-
NR_169552.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC009754, AC025917
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000015.10 Reference GRCh38.p14 Primary Assembly
- Range
-
52581321..52709815 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047432861.1 → XP_047288817.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_047432863.1 → XP_047288819.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_024449991.2 → XP_024305759.1 atos homolog protein A isoform X1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
- Conserved Domains (4) summary
-
- TIGR01612
Location:522 → 758
- 235kDa-fam; reticulocyte binding/rhoptry protein
- pfam13889
Location:1018 → 1075
- Chromosome_seg; Chromosome segregation during meiosis
- pfam13915
Location:878 → 935
- DUF4210; Domain of unknown function (DUF4210)
- cl00262
Location:470 → 520
- TroA-like; Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between ...
-
XM_047432862.1 → XP_047288818.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_047432857.1 → XP_047288813.1 atos homolog protein A isoform X1
- UniProtKB/Swiss-Prot
- A8KA52, B4DEP5, B4DF40, F5H8G0, Q32MH5, Q32MH6, Q4G0R7, Q5XJ16, Q6PDA3, Q9NV24, Q9P2H7
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_047432859.1 → XP_047288815.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_047432860.1 → XP_047288816.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_047432858.1 → XP_047288814.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
Alternate T2T-CHM13v2.0
Genomic
-
NC_060939.1 Alternate T2T-CHM13v2.0
- Range
-
50389635..50518064 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054378454.1 → XP_054234429.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_054378456.1 → XP_054234431.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_054378450.1 → XP_054234425.1 atos homolog protein A isoform X1
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_054378455.1 → XP_054234430.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_054378449.1 → XP_054234424.1 atos homolog protein A isoform X1
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_054378452.1 → XP_054234427.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_054378453.1 → XP_054234428.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9
-
XM_054378451.1 → XP_054234426.1 atos homolog protein A isoform X2
- UniProtKB/TrEMBL
-
H0Y3Q9