sona SON DNA and RNA binding protein a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sonaprovided by ZNC
Official Full Name: SON DNA and RNA binding protein aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5845
See related: Ensembl:ENSDARG00000055389 AllianceGenome:ZFIN:ZDB-GENE-030131-5845
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc30f01; fi20h07; wu:fc30f01; wu:fi20h07; si:dkey-67c22.2
Summary: Predicted to enable RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing and regulation of cell cycle. Human ortholog(s) of this gene implicated in ZTTK syndrome and congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay. Orthologous to human SON (SON DNA and RNA binding protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (35832294..35842375)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (36023109..36033190)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fc30f01.x1 (e-PCR)
- UniSTS:187941

AW153456 (e-PCR)
- UniSTS:205941

fi20h07.y1 (e-PCR)
- UniSTS:197013

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of RNA splicing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of cell cycle	IEA Inferred from Electronic Annotation more info
involved_in regulation of mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: uncharacterized protein LOC792544

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001130400.1 → NP_001123872.1 uncharacterized protein LOC792544

See identical proteins and their annotated locations for NP_001123872.1

Status: PREDICTED

Source sequence(s)

CR548635

UniProtKB/TrEMBL

A0A8N7UZ56, B0UYQ8

Related

ENSDARP00000106482.2, ENSDART00000130549.4

Conserved Domains (2) summary

cl25574
Location:539 → 744

TOP2c; TopoisomeraseII

cl25887
Location:704 → 815

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007120.7 Reference GRCz11 Primary Assembly

Range

35832294..35842375

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021478776.2 → XP_021334451.1 uncharacterized protein LOC792544 isoform X1

UniProtKB/TrEMBL

A0A8N7UZ56, B0UYQ8

Conserved Domains (2) summary

cl25574
Location:539 → 744

TOP2c; TopoisomeraseII

cl25887
Location:704 → 815

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]