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    CKL6 casein kinase I-like 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828972, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CKL6
    Official Full Name
    casein kinase I-like 6
    Primary source
    TAIR:AT4G28540
    Locus tag
    AT4G28540
    See related
    Araport:AT4G28540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    casein kinase I-like 6; F20O9.240; F20O9_240; PAPK1
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    Genomic context

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    See CKL6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Sequence:
    Chromosome: 4; NC_003075.7 (14106735..14110706)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cruciferin 3 Neighboring gene NAC domain containing protein 74 Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene PAK-box/P21-Rho-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Partitioning of casein kinase 1-like 6 to late endosome-like vesicles. Ben-Nissan G, et al. Protoplasma, 2010 Apr. PMID 19941015
    2. Versatile casein kinase 1: multiple locations and functions. Lee JY. Plant Signal Behav, 2009 Jul. PMID 19820321, Free PMC Article
    3. Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules, Ben-Nissan G, et al. Plant Physiol, 2008 Dec. PMID 18945931, Free PMC Article
    4. Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Lee JY, et al. Plant Cell, 2005 Oct. PMID 16126836, Free PMC Article
    5. Members of the Plant CRK Superfamily Are Capable of Trans- and Autophosphorylation of Tyrosine Residues. Nemoto K, et al. J Biol Chem, 2015 Jul 3. PMID 25969537, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. propose that CKL6 is associated with late endosomal-like compartments that are not fully characterized and may play a role in cellular processes important for regulating components in membrane trafficking
      Title: Partitioning of casein kinase 1-like 6 to late endosome-like vesicles.
    2. CKL6 is a protein kinase containing a novel tubulin-binding domain and plays a role in anisotropic cell growth and shape formation in Arabidopsis.
      Title: Arabidopsis casein kinase 1-like 6 contains a microtubule-binding domain and affects the organization of cortical microtubules,
    3. PAPK1 represents a novel plant protein kinase that is targeted to plasmodesmata and may play a regulatory role in macromolecular trafficking between plant cells.[PAPK1]
      Title: Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_118996.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity HDA PubMed 
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables tubulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cortical microtubule organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
    involved_in regulation of cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell junction IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cell periphery IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cortical microtubule IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endomembrane system IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    casein kinase I-like 6
    NP_567812.1
    • casein kinase I-like 6 (CKL6); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: dual specificity kinase 1 (TAIR:AT1G03930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14106735..14110706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118996.5 → NP_567812.1  casein kinase I-like 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567812.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65463, Q8LFV8, Q8LPJ1
      UniProtKB/TrEMBL
      A0A178UYK9, A0A5S9XWP7, A0A7G2F1Q2
      Conserved Domains (2) summary
      PHA03307
      Location:302 → 471
      PHA03307; transcriptional regulator ICP4; Provisional
      cd14125
      Location:12 → 286
      STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPJ1.1

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