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    ndnf-1 Protein NDNF C-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177083, updated on 4-Jan-2025

    Summary

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    Official Symbol
    ndnf-1
    Official Full Name
    Protein NDNF C-terminal domain-containing protein
    Primary source
    WormBase:WBGene00021893
    Locus tag
    CELE_Y54G2A.29
    See related
    AllianceGenome:WB:WBGene00021893
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in extracellular region. Is expressed in body wall musculature. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism. Orthologous to human NDNF (neuron derived neurotrophic factor). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See ndnf-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (3023403..3028942, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Helix-loop-helix protein lin-22 Neighboring gene HECT-type E3 ubiquitin transferase Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Protein NDNF C-terminal domain-containing protein
    NP_500282.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      3023403..3028942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067881.5 → NP_500282.2  Protein NDNF C-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500282.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9N397
      Conserved Domains (1) summary
      pfam10179
      Location:223 → 532
      DUF2369; uncharacterized conserved protein (DUF2369)
    Nucleotide Protein
    Heading Accession and Version

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