U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Mat89Ba Maternal transcript 89Ba [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41973, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mat89Baprovided by FlyBase
    Official Full Name
    Maternal transcript 89Baprovided by FlyBase
    Primary source
    FLYBASE:FBgn0261286
    Locus tag
    Dmel_CG12785
    See related
    AllianceGenome:FB:FBgn0261286
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG12785; Dmel\CG12785
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing; ribosomal small subunit biogenesis; and tRNA export from nucleus. Predicted to be located in condensed nuclear chromosome and nucleolus. Predicted to be part of CURI complex; UTP-C complex; and small-subunit processome. Is expressed in several structures, including embryonic/larval midgut primordium; female germline cell; foregut primordium; gut section; and larval muscle cell. Orthologous to human NOL6 (nucleolar protein 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Mat89Ba in Genome Data Viewer
    Location:
    89B9-89B9; 3-58 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16268329..16272415, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12094051..12098137, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene belphegor Neighboring gene asunder Neighboring gene Mst89B Neighboring gene gilgamesh Neighboring gene Zinc/iron regulated transporter-related protein 89B

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in rRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in ribosomal small subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in tRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of CURI complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of UTP-C complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in condensed nuclear chromosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of small-subunit processome ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    maternal transcript 89Ba
    Names
    CG12785-PA
    Mat89Ba-PA

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      16268329..16272415 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142273.4NP_650530.2  maternal transcript 89Ba [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650530.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8IH00, Q9VEX3
      Conserved Domains (1) summary
      pfam03813
      Location:1661130
      Nrap; Nrap protein