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    atxn7l2a ataxin 7-like 2a [ Danio rerio (zebrafish) ]

    Gene ID: 692316, updated on 9-Dec-2024

    Summary

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    Official Symbol
    atxn7l2aprovided by ZNC
    Official Full Name
    ataxin 7-like 2aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060519-13
    See related
    Ensembl:ENSDARG00000055300 AllianceGenome:ZFIN:ZDB-GENE-060519-13
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi32b11; wu:fi32b11; zgc:136546
    Summary
    Orthologous to human ATXN7L2 (ataxin 7 like 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See atxn7l2a in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (36379296..36407867)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (36117180..36145883)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit alpha 5 Neighboring gene synaptophysin-like 2a Neighboring gene cytochrome b561 family, member D1 Neighboring gene zinc finger and BTB domain containing 40

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Requirement for zebrafish ataxin-7 in differentiation of photoreceptors and cerebellar neurons. Yanicostas C, et al. PLoS One, 2012. PMID 23226359, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ataxin-7-like protein 2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045285.1 → NP_001038750.1  ataxin-7-like protein 2a

      See identical proteins and their annotated locations for NP_001038750.1

      Status: PROVISIONAL

      Source sequence(s)
      BC116583
      UniProtKB/TrEMBL
      Q1JPV4
      Conserved Domains (2) summary
      pfam08313
      Location:239 → 301
      SCA7; SCA7, zinc-binding domain
      cl02872
      Location:311 → 374
      DHQ_Fe-ADH; Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      36379296..36407867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172905.5 → XP_005172962.1  ataxin-7-like protein 2a isoform X1

      UniProtKB/TrEMBL
      A0A8M2BK86
      Related
      ENSDARP00000120087.1, ENSDART00000135360.3
      Conserved Domains (2) summary
      pfam08313
      Location:250 → 312
      SCA7; SCA7, zinc-binding domain
      cl02872
      Location:322 → 385
      DHQ_Fe-ADH; Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)

    2. XM_005172906.4 → XP_005172963.1  ataxin-7-like protein 2a isoform X2

      UniProtKB/TrEMBL
      A0A8M2BK44
      Conserved Domains (2) summary
      pfam08313
      Location:183 → 245
      SCA7; SCA7, zinc-binding domain
      cl02872
      Location:255 → 318
      DHQ_Fe-ADH; Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394825.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      331724..360263
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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