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    RLF reduced lateral root formation [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830827, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RLF
    Official Full Name
    reduced lateral root formation
    Primary source
    TAIR:AT5G09680
    Locus tag
    AT5G09680
    See related
    Araport:AT5G09680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17I14.130; F17I14_130; reduced lateral root formation
    Summary
    Encodes RLF (Reduced Lateral root Formation). Involved in lateral root formation. Contains a cytochrome b5-like heme/steroid binding domain. Localized in the cytosol.
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    Genomic context

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    See RLF in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (2999195..3000658, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene peroxisomal NAD-malate dehydrogenase 2 Neighboring gene loricrin-like protein Neighboring gene magnesium transporter 7 Neighboring gene Glycosyl hydrolase family protein Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RLF, a cytochrome b(5)-like heme/steroid binding domain protein, controls lateral root formation independently of ARF7/19-mediated auxin signaling in Arabidopsis thaliana. Ikeyama Y, et al. Plant J, 2010 Jun 1. PMID 20230485
    2. Intracellular sorting of the tail-anchored protein cytochrome b5 in plants: a comparative study using different isoforms from rabbit and Arabidopsis. Maggio C, et al. J Exp Bot, 2007. PMID 17322552
    3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The RLF gene encodes a cytosolic protein with a cytochrome b5-like heme/steroid binding domain that acts as a regulator positively controlling lateral root formation, and functions independently of the ARF7/19-mediated auxin signaling pathway.
      Title: RLF, a cytochrome b(5)-like heme/steroid binding domain protein, controls lateral root formation independently of ARF7/19-mediated auxin signaling in Arabidopsis thaliana.
    2. Sorting signals of this tail-anchored proteins is studied in plant cells and compared with those of mammalian proteins in rabbits.
      Title: Intracellular sorting of the tail-anchored protein cytochrome b5 in plants: a comparative study using different isoforms from rabbit and Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036784.1
    NM_121005.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lateral root formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    reduced lateral root formation
    NP_001031861.1
    • reduced lateral root formation (RLF); FUNCTIONS IN: heme binding; INVOLVED IN: lateral root formation; LOCATED IN: cytosol; EXPRESSED IN: stem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform A (TAIR:AT1G26340.1); Has 3049 Blast hits to 3033 proteins in 420 species: Archae - 2; Bacteria - 7; Metazoa - 694; Fungi - 1150; Plants - 759; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).
    NP_196530.1
    • reduced lateral root formation (RLF); FUNCTIONS IN: heme binding; INVOLVED IN: lateral root formation; LOCATED IN: cytosol; EXPRESSED IN: stem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform A (TAIR:AT1G26340.1); Has 3049 Blast hits to 3033 proteins in 420 species: Archae - 2; Bacteria - 7; Metazoa - 694; Fungi - 1150; Plants - 759; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2999195..3000658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343055.1 → NP_001330400.1  reduced lateral root formation [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UBE7, A0A1P8BAR6

    2. NM_121005.4 → NP_196530.1  reduced lateral root formation [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196530.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FXX6, Q9LXD1
      UniProtKB/TrEMBL
      A0A5S9Y4Y2, A0A654FZT7
      Conserved Domains (1) summary
      pfam00173
      Location:128 → 201
      Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

    3. NM_001036784.1 → NP_001031861.1  reduced lateral root formation [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031861.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FXX6, Q9LXD1
      UniProtKB/TrEMBL
      A0A5S9Y4Y2, A0A654FZT7
      Conserved Domains (1) summary
      pfam00173
      Location:128 → 201
      Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXD1.1

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