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    transcription regulator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824788, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription regulator
    Primary source
    TAIR:AT3G56220
    Locus tag
    AT3G56220
    See related
    Araport:AT3G56220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (20858742..20860537)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ARM repeat superfamily protein Neighboring gene BTB/POZ domain-containing protein Neighboring gene copper chaperone

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339778.1
    NM_115480.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription regulator
    NP_191181.1
    • transcription regulators; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 248 Blast hits to 248 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20858742..20860537
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115480.4 → NP_191181.1  transcription regulator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191181.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDE0, A0A384L8D6, Q9LYM0
      Conserved Domains (1) summary
      cl00081
      Location:5 → 65
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    2. NM_001339778.1 → NP_001326407.1  transcription regulator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LP66
    Nucleotide Protein
    Heading Accession and Version

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