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    COR47 cold-regulated 47 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838632, updated on 18-Sep-2024

    Summary

    Official Symbol
    COR47
    Official Full Name
    cold-regulated 47
    Primary source
    TAIR:AT1G20440
    Locus tag
    AT1G20440
    See related
    Araport:AT1G20440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtCOR47; cold-regulated 47; F5M15.22; F5M15_22; RD17
    Summary
    Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant.
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    Genomic context

    See COR47 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (7084409..7086873, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene uncharacterized protein Neighboring gene Dehydrin family protein Neighboring gene NADH-ubiquinone oxidoreductase chain Neighboring gene ncRNA

    Interactions

    General gene information

    NM_101894.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    NOT located_in Golgi apparatus PubMed 
    located_in cytosol PubMed 
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    cold-regulated 47
    NP_173468.1
    • cold-regulated 47 (COR47); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.1); Has 14264 Blast hits to 8754 proteins in 735 species: Archae - 48; Bacteria - 976; Metazoa - 4799; Fungi - 1094; Plants - 2502; Viruses - 117; Other Eukaryotes - 4728 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7084409..7086873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101894.4 → NP_173468.1  cold-regulated 47 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173468.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P31168, Q39059
      UniProtKB/TrEMBL
      A0A178WKA9, A0A384KK16, Q0WL48
      Conserved Domains (1) summary
      pfam00257
      Location:136 → 198
      Dehydrin
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