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Nucleoporin interacting component (Nup93/Nic96-like) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818760, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleoporin interacting component (Nup93/Nic96-like) family protein
Primary source
TAIR:AT2G41620
Locus tag
AT2G41620
See related
Araport:AT2G41620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T32G6.14; T32G6_14
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Genomic context

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Location:
chromosome: 2
Exon count:
16
Sequence:
Chromosome: 2; NC_003071.7 (17347304..17355103, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene Mitochondrial glycoprotein family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene transcription factor IIB Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana. Chang IF, et al. Proteomics, 2009 Jun. PMID 19452453, Free PMC Article
  2. Identification of ubiquitinated proteins in Arabidopsis. Manzano C, et al. Plant Mol Biol, 2008 Sep. PMID 18535787
  3. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  4. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_129725.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleolus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Nucleoporin interacting component (Nup93/Nic96-like) family protein
NP_565951.1
  • Nucleoporin interacting component (Nup93/Nic96-like) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: transport; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: Nucleoporin interacting component (Nup93/Nic96-like) family protein (TAIR:AT3G57350.1); Has 357 Blast hits to 350 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 130; Plants - 48; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17347304..17355103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129725.5 → NP_565951.1  Nucleoporin interacting component (Nup93/Nic96-like) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565951.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22224, Q94CF2
    UniProtKB/TrEMBL
    A0A178VRC1, A0A5S9X678
    Conserved Domains (1) summary
    pfam04097
    Location:248 → 820
    Nic96; Nup93/Nic96
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22224.2

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