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    RPS5B ribosomal protein 5B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818304, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPS5B
    Official Full Name
    ribosomal protein 5B
    Primary source
    TAIR:AT2G37270
    Locus tag
    AT2G37270
    See related
    Araport:AT2G37270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRPS5B; F3G5.6; F3G5_6; ribosomal protein 5B
    Summary
    One of two genes encoding the ribosomal protein S5. Expressed at a lower level compared to ATRPS5A.
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    Genomic context

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    See RPS5B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (15647677..15649471, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene adenosine kinase Neighboring gene WRKY family transcription factor family protein Neighboring gene pleiotropic drug resistance 5 Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana. Li Q, et al. PLoS Genet, 2015 May. PMID 25933434, Free PMC Article
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    4. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    5. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036425.2
    NM_129283.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosolic ribosome HDA PubMed 
    part_of cytosolic small ribosomal subunit HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein 5B
    NP_001031502.1
    • ribosomal protein 5B (RPS5B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5A (TAIR:AT3G11940.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_181264.1
    • ribosomal protein 5B (RPS5B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, pollen tube, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7, conserved site (InterPro:IPR020606), Ribosomal protein S7, eukaryotic/archaeal (InterPro:IPR005716), Ribosomal protein S7 (InterPro:IPR000235); BEST Arabidopsis thaliana protein match is: ribosomal protein 5A (TAIR:AT3G11940.2); Has 8721 Blast hits to 8721 proteins in 3528 species: Archae - 243; Bacteria - 4624; Metazoa - 988; Fungi - 182; Plants - 1133; Viruses - 0; Other Eukaryotes - 1551 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15647677..15649471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129283.4 → NP_181264.1  ribosomal protein 5B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181264.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L967, Q9ZUT9
      UniProtKB/TrEMBL
      A0A178VNW7, A0A5S9X4R2
      Conserved Domains (1) summary
      cd14867
      Location:20 → 207
      uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7

    2. NM_001036425.2 → NP_001031502.1  ribosomal protein 5B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031502.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L967, Q9ZUT9
      UniProtKB/TrEMBL
      A0A178VNW7, A0A5S9X4R2
      Conserved Domains (1) summary
      cd14867
      Location:20 → 207
      uS7_Eukaryote; Eukaryota homolog of Ribosomal Protein S7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZUT9.1

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