NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15228111|ref|NP_181264|]
View 

ribosomal protein 5B [Arabidopsis thaliana]

Protein Classification

40S ribosomal protein S5( domain architecture ID 10201903)

40S ribosomal protein S5

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 20-207 1.78e-133

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271246  Cd Length: 185  Bit Score: 371.89  E-value: 1.78e-133
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  20 KLFNRWSFDDVSVTDISLVDYIGVqpsKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA 99
Cdd:cd14867   1 KLFGKWSYDDVEVKDPSLKDYINL---KYPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHA 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADE 179
Cdd:cd14867  78 FEIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADE 157

                       170       180
                ....*....|....*....|....*...
gi 15228111 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:cd14867 158 LINAAKGSSNSYAIKKKDELERVAKSNR 185
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 20-207 1.78e-133

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 371.89  E-value: 1.78e-133
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  20 KLFNRWSFDDVSVTDISLVDYIGVqpsKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA 99
Cdd:cd14867   1 KLFGKWSYDDVEVKDPSLKDYINL---KYPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHA 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADE 179
Cdd:cd14867  78 FEIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADE 157

                       170       180
                ....*....|....*....|....*...
gi 15228111 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:cd14867 158 LINAAKGSSNSYAIKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 16-207 1.25e-127

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 357.54  E-value: 1.25e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   16 TNEVKLFNRWSFDDVSVTDISLVDYIGVQPsKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 95
Cdd:PTZ00091   3 ANEPKLFGKWSYDDVQVSDLSLKDYIAVTT-KASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   96 VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAEC 175
Cdd:PTZ00091  82 VKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAEC 161

                        170       180       190
                 ....*....|....*....|....*....|..
gi 15228111  176 LADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:PTZ00091 162 LADEIINASKESSNSYAIKKKDEVERVAKANR 193
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 18-207 1.78e-101

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 290.90  E-value: 1.78e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111    18 EVKLFNRWSFDDVSVTDISLVDYIGVQPskhaTFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVK 97
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEP----IYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVK 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111    98 HAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLA 177
Cdd:TIGR01028  77 EAFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLA 156

                         170       180       190
                  ....*....|....*....|....*....|
gi 15228111   178 DELINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:TIGR01028 157 EEIILAANGDSKSYAIKKKEELERVAKSAR 186
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 67-207 2.43e-56

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 174.49  E-value: 2.43e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111    67 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISP 146
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15228111   147 LRRVNQAIFLLTTGAReaaFRNIKTIAECLADELINAAKGSsnSYAIKKKDEIERVAKANR 207
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR 132
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 66-207 4.95e-18

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 77.02  E-value: 4.95e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  66 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGP------RedatRIGsaGVVRR 139
Cdd:COG0049  17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPlvevksR----RVG--GATYQ 86

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228111 140 QAVDISPLRRVNQAIFLLTTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:COG0049  87 VPVEVRPERRQALAMRWIIDAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHKMAEANK 149
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 20-207 1.78e-133

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 371.89  E-value: 1.78e-133
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  20 KLFNRWSFDDVSVTDISLVDYIGVqpsKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA 99
Cdd:cd14867   1 KLFGKWSYDDVEVKDPSLKDYINL---KYPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHA 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111 100 MEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADE 179
Cdd:cd14867  78 FEIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADE 157

                       170       180
                ....*....|....*....|....*...
gi 15228111 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:cd14867 158 LINAAKGSSNSYAIKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 16-207 1.25e-127

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 357.54  E-value: 1.25e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   16 TNEVKLFNRWSFDDVSVTDISLVDYIGVQPsKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 95
Cdd:PTZ00091   3 ANEPKLFGKWSYDDVQVSDLSLKDYIAVTT-KASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   96 VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAEC 175
Cdd:PTZ00091  82 VKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAEC 161

                        170       180       190
                 ....*....|....*....|....*....|..
gi 15228111  176 LADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:PTZ00091 162 LADEIINASKESSNSYAIKKKDEVERVAKANR 193
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 18-207 1.78e-101

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 290.90  E-value: 1.78e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111    18 EVKLFNRWSFDDVSVTDISLVDYIGVQPskhaTFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVK 97
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEP----IYVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVK 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111    98 HAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLA 177
Cdd:TIGR01028  77 EAFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLA 156

                         170       180       190
                  ....*....|....*....|....*....|
gi 15228111   178 DELINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:TIGR01028 157 EEIILAANGDSKSYAIKKKEELERVAKSAR 186
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 16-207 5.46e-88

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 257.14  E-value: 5.46e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   16 TNEVKLFNRWSFDDVSVTDISLVDYIGVQPskhaTFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 95
Cdd:PRK04027   8 PMEIKLFGKWDVEEVEVRDPSLKRYINLTP----VLVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYNI 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   96 VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAEC 175
Cdd:PRK04027  84 VKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEEA 163

                        170       180       190
                 ....*....|....*....|....*....|..
gi 15228111  176 LADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Cdd:PRK04027 164 LAEEIIAAANNDPKSYAVRKKEEIERVAKSAR 195
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 67-207 2.43e-56

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 174.49  E-value: 2.43e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111    67 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISP 146
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15228111   147 LRRVNQAIFLLTTGAReaaFRNIKTIAECLADELINAAKGSsnSYAIKKKDEIERVAKANR 207
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR 132
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 69-207 6.79e-23

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 89.24  E-value: 6.79e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  69 CPIVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLR 148
Cdd:cd00323   1 KLLLKKFINILMKDG----KKSKAEKIFSKALKILKKKTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNR 76

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 15228111 149 RVNQAIFLLTTGAREaafRNIKTIAECLADELINAAKGSSNSyaIKKKDEIERVAKANR 207
Cdd:cd00323  77 QVSLAIKWLLKAVRK---RKETSFAERLANEILDASNNKGAS--IKKKDDLHKLAEANR 130
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 66-207 2.95e-22

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 87.50  E-value: 2.95e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  66 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED--ATRIGsaGVVRRQAVD 143
Cdd:cd14869   6 KYNSVLVSKFINKLMKDG----KKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEvrSRRVG--GATYQVPVE 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15228111 144 ISPLRRVNQAIFLLTTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:cd14869  80 VRPERRQSLALRWIIEAARK---RKEKSMAEKLAAELLDAANNTGA--AVKKKEDTHKMAEANK 138
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 66-207 4.95e-18

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 77.02  E-value: 4.95e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  66 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGP------RedatRIGsaGVVRR 139
Cdd:COG0049  17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPlvevksR----RVG--GATYQ 86

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228111 140 QAVDISPLRRVNQAIFLLTTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:COG0049  87 VPVEVRPERRQALAMRWIIDAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHKMAEANK 149
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 74-207 4.95e-17

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 74.23  E-value: 4.95e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  74 RLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED--ATRIGsaGVVRRQAVDISPLRRVN 151
Cdd:cd14871  13 RLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEvkARRVG--GSTYQVPVEVRSERGTA 90

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 15228111 152 QAIFLLTTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:cd14871  91 LAIRWLLKASRK---RSGRSMASKLANEIIDAAKNTGN--AIRKKEETHRMAEANK 141
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 71-207 5.29e-17

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 74.37  E-value: 5.29e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   71 IVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED--ATRIGsaGVVRRQAVDISPLR 148
Cdd:PRK05302  22 LVTKFINKLMLDG----KKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEvkSRRVG--GATYQVPVEVRPER 95

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15228111  149 RVNQAIFLLTTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:PRK05302  96 RQALAMRWLVEAARK---RGEKTMAERLANELLDAANNRGA--AVKKREDTHRMAEANK 149
rps7 CHL00053
ribosomal protein S7
 74-207 4.41e-16

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 71.84  E-value: 4.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111   74 RLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED--ATRIGsaGVVRRQAVDISPLRRVN 151
Cdd:CHL00053  21 RLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEvkARRVG--GSTYQVPIEIGSTRGKA 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15228111  152 QAIFLLTTGAREAAFRNiktIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:CHL00053  99 LAIRWLLKASRKRSGRN---MAFKLSSELVDAAKGSGN--AIRKKEETHRMAEANR 149
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 71-207 9.43e-15

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 68.48  E-value: 9.43e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111    71 IVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED--ATRIGsaGVVRRQAVDISPLR 148
Cdd:TIGR01029  20 LLNKFINRVMKDG----KKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEvkSRRVG--GATYQVPVEVRPSR 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15228111   149 RVNQAIFLLTTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:TIGR01029  94 RYALAIRWLIEAARK---RGGKSMAERLANEILDAANNTGA--AIKKREDTHRMAEANK 147
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 70-207 1.90e-12

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 62.21  E-value: 1.90e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  70 PIVERLTNSLMMHGrnngKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGP--REDATRIGSAGVVR------RQa 141
Cdd:cd14868  23 PLLEQLTNLIMKHG----KKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPlvKIKSQKKGAKNVQVpvplneRQ- 97

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228111 142 vdisplrRVNQAI-FLLttgarEAA-FRNIKTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:cd14868  98 -------RRRKAIkWIL-----EASdKRPGKSFSERLAEEIIAVVEGTSS--ALEKKEQVHKLAVANR 151
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 70-207 7.18e-10

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 55.08  E-value: 7.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  70 PIVERLTNSLMMhgrnNGKKLMAVRIVKHAMEII---HLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISP 146
Cdd:cd15484   2 LLIKKFVNFLMK----KGKKTKARTILFKTFHLLkqkQSAQTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSP 77

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15228111 147 LRRVNQAIFLLTTGAREAAFRNIK---TIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:cd15484  78 NKQETLAIRWILEAAKKKQRKQSKkrySFAYCLADEILDASKKQGK--ARQKRDELHKLAEANR 139
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 70-207 2.03e-08

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 52.24  E-value: 2.03e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228111  70 PIVERLTNSLMmhgrNNGKKLMAVRIVKHAMEII--------HLLSD-------LNPIQVIIDAIVNSGPREDATRIGSA 134
Cdd:cd14870  49 PLVSKFINMMM----KKGNKELAREIVEKTLENIkriqlekyHKATDeekesieLNPLVIFHKAVENCKPLLGLTSVKRG 124

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15228111 135 GVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNikTIAECLADELINAAKGSSNsyAIKKKDEIERVAKANR 207
Cdd:cd14870 125 GKTYQVPVPITPNRARFLAMKWLIEACREKKRKI--RFPEKLARELLDASNNQGK--VVKKKQELHKQCEANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH