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    BTB/POZ domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842025, updated on 18-Sep-2024

    Summary

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    Official Full Name
    BTB/POZ domain-containing protein
    Primary source
    TAIR:AT1G55760
    Locus tag
    AT1G55760
    See related
    Araport:AT1G55760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20N2.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (20846872..20849054, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene seed imbibition 1 Neighboring gene BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) Neighboring gene uncharacterized protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene heavy metal-associated domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtSIBP1, a Novel BTB Domain-Containing Protein, Positively Regulates Salt Signaling in Arabidopsis thaliana. Wan X, et al. Plants (Basel), 2019 Dec 5. PMID 31817461, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104452.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein
    NP_175972.1
    • BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G21780.2); Has 5280 Blast hits to 5249 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 3933; Fungi - 29; Plants - 1085; Viruses - 19; Other Eukaryotes - 214 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20846872..20849054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104452.4 → NP_175972.1  BTB/POZ domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175972.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q680K8
      UniProtKB/TrEMBL
      A0A178WJT6, A0A5S9WMN8
      Conserved Domains (3) summary
      smart00225
      Location:165 → 262
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:154 → 255
      BTB; BTB/POZ domain
      cl06652
      Location:262 → 318
      BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q680K8.1

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