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    TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843532, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TCP family transcription factor
    Primary source
    TAIR:AT1G72010
    Locus tag
    AT1G72010
    See related
    Araport:AT1G72010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTCP22; F28P5.10; F28P5_10; TCP domain protein 22; TCP22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (27107558..27109275)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 13 Neighboring gene Plant neutral invertase family protein Neighboring gene TonB-dependent heme receptor A Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. Kim SH, et al. Plant J, 2014 Jun. PMID 24689742
    2. Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height. Davière JM, et al. Curr Biol, 2014 Aug 18. PMID 25127215
    3. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105859.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TCP family transcription factor
    NP_177346.1
    • TCP family transcription factor; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G35560.1); Has 492 Blast hits to 490 proteins in 74 species: Archae - 0; Bacteria - 8; Metazoa - 7; Fungi - 7; Plants - 465; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27107558..27109275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105859.5 → NP_177346.1  TCP family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177346.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C7G4
      UniProtKB/TrEMBL
      A0A178W3Z1, A0A654EYY4
      Conserved Domains (1) summary
      pfam03634
      Location:62 → 188
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7G4.1

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