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Conserved domains on  [gi|15218305|ref|NP_177346|]
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TCP family transcription factor [Arabidopsis thaliana]

Protein Classification

TCP family transcription factor( domain architecture ID 10508254)

TCP family transcription factor is a plant-specific transcription factor and may be involved in a wide range of functions such as in leaf development, flower symmetry, shoot branching, and senescence

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 62-188 2.15e-39

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


:

Pssm-ID: 460998  Cd Length: 152  Bit Score: 137.48  E-value: 2.15e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218305    62 PTKDRHTKV--DG--RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLRSg 137
Cdd:pfam03634   2 SKKDRHSKIctAGglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANFSSLSISLRS- 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15218305   138 GGSTLFSQASKSSSSPLSFHSTGMSLYEDNNGTNGSSVDPSRKLLNSAANA 188
Cdd:pfam03634  81 SGESVSGIDEQAVALLNFHSTNQNSARKKGQNMKSKKSKGSSKLSASRSLA 131
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 62-188 2.15e-39

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 137.48  E-value: 2.15e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218305    62 PTKDRHTKV--DG--RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLRSg 137
Cdd:pfam03634   2 SKKDRHSKIctAGglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANFSSLSISLRS- 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15218305   138 GGSTLFSQASKSSSSPLSFHSTGMSLYEDNNGTNGSSVDPSRKLLNSAANA 188
Cdd:pfam03634  81 SGESVSGIDEQAVALLNFHSTNQNSARKKGQNMKSKKSKGSSKLSASRSLA 131
TCP2 PLN03106
Protein TCP2; Provisional
 64-114 2.35e-03

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 39.68  E-value: 2.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15218305   64 KDRHTKV----DGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAI 114
Cdd:PLN03106  75 KDRHSKVltskGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSI 129
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 62-188 2.15e-39

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 137.48  E-value: 2.15e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218305    62 PTKDRHTKV--DG--RGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLRSg 137
Cdd:pfam03634   2 SKKDRHSKIctAGglRDRRVRLSLECARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKELTGTGTIPANFSSLSISLRS- 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15218305   138 GGSTLFSQASKSSSSPLSFHSTGMSLYEDNNGTNGSSVDPSRKLLNSAANA 188
Cdd:pfam03634  81 SGESVSGIDEQAVALLNFHSTNQNSARKKGQNMKSKKSKGSSKLSASRSLA 131
TCP2 PLN03106
Protein TCP2; Provisional
 64-114 2.35e-03

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 39.68  E-value: 2.35e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15218305   64 KDRHTKV----DGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAI 114
Cdd:PLN03106  75 KDRHSKVltskGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSI 129
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 64-140 3.10e-03

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 39.08  E-value: 3.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15218305   64 KDRHTKV----DGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIiasTGTGTIPANFSTLNAS---LRS 136
Cdd:PLN03105  51 KDRHSKVltskGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSI---TDLPLLNTNFDHLDQNqnqTKS 127


                 ....
gi 15218305  137 GGGS 140
Cdd:PLN03105 128 ACSS 131
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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