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    CLO4 Caleosin-related family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843404, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLO4
    Official Full Name
    Caleosin-related family protein
    Primary source
    TAIR:AT1G70670
    Locus tag
    AT1G70670
    See related
    Araport:AT1G70670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana caleosin 4; AtCLO4; caleosin 4; F5A18.15; F5A18_15; peroxygenase 4; PXG4
    Summary
    The gene encodes a stress-responsive and OB-associated non-seed caleosin-like protein. It plays a negative regulator role in ABA signaling.
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    Genomic context

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    See CLO4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (26644565..26646200)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ran BP2/NZF zinc finger-like superfamily protein Neighboring gene microRNA ath-MIR777 precursor Neighboring gene MMS ZWEI homologue 2 Neighboring gene Caleosin-related family protein Neighboring gene Receptor-like protein kinase-related family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A non-canonical caleosin from Arabidopsis efficiently epoxidizes physiological unsaturated fatty acids with complete stereoselectivity. Blée E, et al. FEBS J, 2012 Oct. PMID 22913587
    2. A stress-responsive caleosin-like protein, AtCLO4, acts as a negative regulator of ABA responses in Arabidopsis. Kim YY, et al. Plant Cell Physiol, 2011 May. PMID 21471120
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that linoleic and linolenic acids were the preferred substrates for PXG4 (AT1G70670; AtClO4); they are oxidized into the different positional isomers of the monoepoxides and into diepoxides.
      Title: A non-canonical caleosin from Arabidopsis efficiently epoxidizes physiological unsaturated fatty acids with complete stereoselectivity.
    2. The oil-body -associated Ca(2+)-binding AtCLO4 protein acts as a negative regulator of abscissic acid responses in Arabidopsis.[AtCLO4]
      Title: A stress-responsive caleosin-like protein, AtCLO4, acts as a negative regulator of ABA responses in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_105735.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables plant seed peroxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within drought recovery IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Caleosin-related family protein
    NP_564995.1
    • Caleosin-related family protein; CONTAINS InterPro DOMAIN/s: Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: Caleosin-related family protein (TAIR:AT1G70680.1); Has 341 Blast hits to 336 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 60; Plants - 278; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26644565..26646200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105735.3 → NP_564995.1  Caleosin-related family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564995.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L9R2, Q9CAB7
      UniProtKB/TrEMBL
      A0A178WGM7, A0A5S9WR79, A0A654EMW5
      Conserved Domains (1) summary
      pfam05042
      Location:19 → 182
      Caleosin; Caleosin related protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAB7.1

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