NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18409649|ref|NP_564995|]
View 

Caleosin-related family protein [Arabidopsis thaliana]

Protein Classification

caleosin family protein( domain architecture ID 10523582)

caleosin family protein similar to plant calcium-binding peroxygenase involved in the degradation of storage lipid in oil bodies

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Caleosin pfam05042
Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins ...
 19-182 3.48e-99

Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036.


:

Pssm-ID: 428275  Cd Length: 169  Bit Score: 283.97  E-value: 3.48e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409649    19 LQRHVAFFDRNKDGIVYPSETFQGFRAIGCGYLLSAVASVFINIGLSSKTRPGKGFSIWFPIEVKNIHLAKHGSDSGVYD 98
Cdd:pfam05042   6 LQQHVAFFDRDKDGIIYPWDTYRGFRALGFGILLSLLAALIIHGNLSYPTRPSWLPDPFFRIYVKNIHKAKHGSDSGTYD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409649    99 KDGRFVASKFEEIFTKHAHTHRDALTNEELKQLLKANKEPNDRKGWLAGYTEWKVLHYLCKDKNGLLHKDTVRAAYDGSL 178
Cdd:pfam05042  86 TEGRFVPQKFEEIFSKYAKTGKDALTLGELWRMLKGNRDAFDPFGWAAAFFEWGALYLLLWDKDGRLRKEDVRGVYDGSL 165


                  ....
gi 18409649   179 FEKL 182
Cdd:pfam05042 166 FYKI 169
 
Name Accession Description Interval E-value
Caleosin pfam05042
Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins ...
 19-182 3.48e-99

Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036.


Pssm-ID: 428275  Cd Length: 169  Bit Score: 283.97  E-value: 3.48e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409649    19 LQRHVAFFDRNKDGIVYPSETFQGFRAIGCGYLLSAVASVFINIGLSSKTRPGKGFSIWFPIEVKNIHLAKHGSDSGVYD 98
Cdd:pfam05042   6 LQQHVAFFDRDKDGIIYPWDTYRGFRALGFGILLSLLAALIIHGNLSYPTRPSWLPDPFFRIYVKNIHKAKHGSDSGTYD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409649    99 KDGRFVASKFEEIFTKHAHTHRDALTNEELKQLLKANKEPNDRKGWLAGYTEWKVLHYLCKDKNGLLHKDTVRAAYDGSL 178
Cdd:pfam05042  86 TEGRFVPQKFEEIFSKYAKTGKDALTLGELWRMLKGNRDAFDPFGWAAAFFEWGALYLLLWDKDGRLRKEDVRGVYDGSL 165


                  ....
gi 18409649   179 FEKL 182
Cdd:pfam05042 166 FYKI 169
 
Name Accession Description Interval E-value
Caleosin pfam05042
Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins ...
 19-182 3.48e-99

Caleosin related protein; This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036.


Pssm-ID: 428275  Cd Length: 169  Bit Score: 283.97  E-value: 3.48e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409649    19 LQRHVAFFDRNKDGIVYPSETFQGFRAIGCGYLLSAVASVFINIGLSSKTRPGKGFSIWFPIEVKNIHLAKHGSDSGVYD 98
Cdd:pfam05042   6 LQQHVAFFDRDKDGIIYPWDTYRGFRALGFGILLSLLAALIIHGNLSYPTRPSWLPDPFFRIYVKNIHKAKHGSDSGTYD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409649    99 KDGRFVASKFEEIFTKHAHTHRDALTNEELKQLLKANKEPNDRKGWLAGYTEWKVLHYLCKDKNGLLHKDTVRAAYDGSL 178
Cdd:pfam05042  86 TEGRFVPQKFEEIFSKYAKTGKDALTLGELWRMLKGNRDAFDPFGWAAAFFEWGALYLLLWDKDGRLRKEDVRGVYDGSL 165


                  ....
gi 18409649   179 FEKL 182
Cdd:pfam05042 166 FYKI 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH