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    CYCD3;3 CYCLIN D3;3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824169, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYCD3;3
    Official Full Name
    CYCLIN D3;3
    Primary source
    TAIR:AT3G50070
    Locus tag
    AT3G50070
    See related
    Araport:AT3G50070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CYCLIN D3;3
    Summary
    Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.
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    Genomic context

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    See CYCD3;3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (18565134..18566834, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene myb domain protein 77 Neighboring gene VIER F-box protein 2 Neighboring gene Exonuclease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. WOX5 suppresses CYCLIN D activity to establish quiescence at the center of the root stem cell niche. Forzani C, et al. Curr Biol, 2014 Aug 18. PMID 25127220, Free PMC Article
    2. Arabidopsis CYCD3 D-type cyclins link cell proliferation and endocycles and are rate-limiting for cytokinin responses. Dewitte W, et al. Proc Natl Acad Sci U S A, 2007 Sep 4. PMID 17726100, Free PMC Article
    3. D-type cyclins control cell division and developmental rate during Arabidopsis seed development. Collins C, et al. J Exp Bot, 2012 Jun. PMID 22412186, Free PMC Article
    4. Requirement for A-type cyclin-dependent kinase and cyclins for the terminal division in the stomatal lineage of Arabidopsis. Yang K, et al. J Exp Bot, 2014 Jun. PMID 24687979, Free PMC Article
    5. Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network. Boruc J, et al. Plant Cell, 2010 Apr. PMID 20407024, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_114867.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in guard mother cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of cell population proliferation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within seed development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CYCLIN D3;3
    NP_190576.1
    • CYCLIN D3;3 (CYCD3;3); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 3177 Blast hits to 3175 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 1493; Fungi - 379; Plants - 953; Viruses - 3; Other Eukaryotes - 349 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18565134..18566834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114867.3 → NP_190576.1  CYCLIN D3;3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190576.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SN11
      UniProtKB/TrEMBL
      A0A178VE15, A0A5S9XJG0, A0A7G2ETX5
      Conserved Domains (2) summary
      cd20543
      Location:85 → 183
      CYCLIN_AtCycD-like_rpt1; first cyclin box found in plant cyclin-delta family
      cd20544
      Location:188 → 278
      CYCLIN_AtCycD-like_rpt2; second cyclin box found in plant cyclin-delta family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SN11.1

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