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    Chitinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818964, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Chitinase family protein
    Primary source
    TAIR:AT2G43620
    Locus tag
    AT2G43620
    See related
    Araport:AT2G43620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O19.27
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (18093694..18095093, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Chitinase family protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene nucleusenvelope protein Neighboring gene Signal recognition particle, SRP9/SRP14 subunit Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_129924.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    Chitinase family protein
    NP_181890.1
    • Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: response to salt stress; LOCATED IN: apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43610.1); Has 3021 Blast hits to 2751 proteins in 582 species: Archae - 0; Bacteria - 707; Metazoa - 34; Fungi - 290; Plants - 1778; Viruses - 39; Other Eukaryotes - 173 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18093694..18095093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129924.3 → NP_181890.1  Chitinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181890.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22841
      UniProtKB/TrEMBL
      A0A178VXW7, A0A5S9X782
      Conserved Domains (2) summary
      cd00325
      Location:94 → 283
      chitinase_GH19; Glycoside hydrolase family 19, chitinase domain
      pfam00187
      Location:30 → 61
      Chitin_bind_1; Chitin recognition protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22841.1

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