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    Rer1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816339, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rer1 family protein
    Primary source
    TAIR:AT2G18240
    Locus tag
    AT2G18240
    See related
    Araport:AT2G18240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (7935244..7936900)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Noc2p family Neighboring gene pyrophosphorylase 2 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene 4-phosphopantetheine adenylyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_127381.4
    NM_179643.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Rer1 family protein
    NP_565431.1
    • Rer1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511 Blast hits to 511 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
    NP_849974.1
    • Rer1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Retrieval of early ER protein Rer1 (InterPro:IPR004932); BEST Arabidopsis thaliana protein match is: endoplasmatic reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511 Blast hits to 511 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7935244..7936900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127381.4 → NP_565431.1  Rer1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565431.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1A6K2, Q9ZPV7
      UniProtKB/TrEMBL
      A0A178VWF8, A0A5S9WYZ2, A0A654ETV5
      Conserved Domains (1) summary
      pfam03248
      Location:21 → 181
      Rer1; Rer1 family

    2. NM_179643.1 → NP_849974.1  Rer1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849974.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETV5
      Conserved Domains (1) summary
      pfam03248
      Location:22 → 181
      Rer1; Rer1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZPV7.2

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