LOCUS NM_127381 1324 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Rer1 family protein (AT2G18240), mRNA.
ACCESSION NM_127381
VERSION NM_127381.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1324)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 1324)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1324)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1324)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_127381.3.
FEATURES Location/Qualifiers
source 1..1324
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..1324
/locus_tag="AT2G18240"
/db_xref="Araport:AT2G18240"
/db_xref="GeneID:816339"
/db_xref="TAIR:AT2G18240"
CDS 223..888
/locus_tag="AT2G18240"
/inference="Similar to RNA sequence,
EST:INSD:DR211135.1,INSD:AU230665.1,INSD:Z18433.1,
INSD:BP799294.1,INSD:EL192863.1,INSD:BP797336.1,
INSD:BP836179.1,INSD:BP657292.1,INSD:AV567323.1,
INSD:AU239367.1,INSD:BP825147.1,INSD:ES085153.1,
INSD:EL078986.1,INSD:AU227301.1,INSD:ES192869.1,
INSD:ES068159.1,INSD:AU236389.1,INSD:T21112.1,
INSD:N65540.1,INSD:ES170107.1,INSD:BP833802.1,
INSD:ES102625.1,INSD:BP815753.1,INSD:ES029378.1,
INSD:BP783805.1,INSD:AI100473.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT030063.1,INSD:AK118500.1,INSD:AK228424.1"
/note="Rer1 family protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: integral to
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Retrieval of early ER protein Rer1 (InterPro:IPR004932);
BEST Arabidopsis thaliana protein match is: endoplasmatic
reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511
Blast hits to 511 proteins in 212 species: Archae - 0;
Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128;
Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink)."
/codon_start=1
/product="Rer1 family protein"
/protein_id="NP_565431.1"
/db_xref="Araport:AT2G18240"
/db_xref="GeneID:816339"
/db_xref="TAIR:AT2G18240"
/translation="MEDEPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRR
WLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPV
DESDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLT
MKRLIVHMFKYRYFPFDVRKPVKLLKFLVNSVLTFLRLKKGDGGDDRPSSSNSSQGNE
KQD"
ORIGIN
1 cttcctcttc tttccagaaa aaccaagact ttaatacgac taagaaaaat tcagacgaaa
61 ctgagaaact ttcaatttaa ttggttcaaa atcatcctaa atcgagtaga ttgttttgaa
121 tcgatttttg aagttgattc gaagttcagt gattgtgatt agaatttata accagaccca
181 gtttttgagg tgaagaaaaa gcagattttg tgttcaattt ccatggaaga cgaaccagga
241 agcgaaaatg aagcagacac catagttgct tcaccacttg caaaatggag aatcgaattc
301 tcgaaatcgt ttcagaatta cttagacaga tctgctccta acattgttcg aagatggctt
361 gtgactttag tcgctgcagt gatctatatc tatagggttt actctgttta tggatacttc
421 gttatctctt atggcttagc tacttatatc ttaaatctct tgattggttt cctttcccct
481 aaagttgatc ctgaacttga agctttggat cctgattctt tacctgttga tgagtctgat
541 gagtataagc cctttgttcg tcgtcttcct gagttcaagt tctggtatgc agcgactaaa
601 gcatttgttg ttgcatttgt gatgacattc ttctctttcc tggatgtgcc tgtgttctgg
661 ccgatcttgt tgtgttactg gttggttttg tattctttaa ctatgaaacg cttaatcgtg
721 cacatgttca agtatagata ctttcctttc gatgtaagaa agcctgtgaa gctgctcaag
781 tttcttgtaa acagtgtcct gaccttttta agactcaaga agggtgatgg tggagatgat
841 aggcccagca gcagcaattc atctcaggga aatgaaaaac aagattagat gcgaacagta
901 gatcaggtac tgatctcgac gtggtgatag gcgaagcaag aaaggataca aactaaggat
961 atcaaagtaa aatatactat agccatgctg gtggaatagg aaaacaaagt tcttgaagct
1021 taacagaact aagaaatctc tctgagtttt gagtaatctc ctgcattttc cggtttttgc
1081 attgtaatgt gtaacagtgt attttacaat tatacgttta aatgaatttg ggaatcacaa
1141 gtaggaaaaa gtattcttta cagttccagg acttggatac tactctggac acaactaatc
1201 acacaaagct gtgttgacag cctccaatac caagcactgg tccaaatctc tttgcagaaa
1261 cagatacaga ttggtcatca tactcggaga actgtgtgga ctcgagtgta cttacttgac
1321 ttcc
//