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Arabidopsis thaliana Rer1 family protein (AT2G18240), mRNA

NCBI Reference Sequence: NM_127381.4

FASTA Graphics 

LOCUS       NM_127381               1324 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Rer1 family protein (AT2G18240), mRNA.
ACCESSION   NM_127381
VERSION     NM_127381.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1324)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 1324)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1324)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1324)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_127381.3.
FEATURES             Location/Qualifiers
     source          1..1324
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..1324
                     /locus_tag="AT2G18240"
                     /db_xref="Araport:AT2G18240"
                     /db_xref="GeneID:816339"
                     /db_xref="TAIR:AT2G18240"
     CDS             223..888
                     /locus_tag="AT2G18240"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR211135.1,INSD:AU230665.1,INSD:Z18433.1,
                     INSD:BP799294.1,INSD:EL192863.1,INSD:BP797336.1,
                     INSD:BP836179.1,INSD:BP657292.1,INSD:AV567323.1,
                     INSD:AU239367.1,INSD:BP825147.1,INSD:ES085153.1,
                     INSD:EL078986.1,INSD:AU227301.1,INSD:ES192869.1,
                     INSD:ES068159.1,INSD:AU236389.1,INSD:T21112.1,
                     INSD:N65540.1,INSD:ES170107.1,INSD:BP833802.1,
                     INSD:ES102625.1,INSD:BP815753.1,INSD:ES029378.1,
                     INSD:BP783805.1,INSD:AI100473.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT030063.1,INSD:AK118500.1,INSD:AK228424.1"
                     /note="Rer1 family protein; FUNCTIONS IN:
                     molecular_function unknown; INVOLVED IN:
                     biological_process unknown; LOCATED IN: integral to
                     membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
                     DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
                     Retrieval of early ER protein Rer1 (InterPro:IPR004932);
                     BEST Arabidopsis thaliana protein match is: endoplasmatic
                     reticulum retrieval protein 1B (TAIR:AT2G21600.1); Has 511
                     Blast hits to 511 proteins in 212 species: Archae - 0;
                     Bacteria - 0; Metazoa - 154; Fungi - 148; Plants - 128;
                     Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Rer1 family protein"
                     /protein_id="NP_565431.1"
                     /db_xref="Araport:AT2G18240"
                     /db_xref="GeneID:816339"
                     /db_xref="TAIR:AT2G18240"
                     /translation="MEDEPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRR
                     WLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPV
                     DESDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLT
                     MKRLIVHMFKYRYFPFDVRKPVKLLKFLVNSVLTFLRLKKGDGGDDRPSSSNSSQGNE
                     KQD"
ORIGIN      
        1 cttcctcttc tttccagaaa aaccaagact ttaatacgac taagaaaaat tcagacgaaa
       61 ctgagaaact ttcaatttaa ttggttcaaa atcatcctaa atcgagtaga ttgttttgaa
      121 tcgatttttg aagttgattc gaagttcagt gattgtgatt agaatttata accagaccca
      181 gtttttgagg tgaagaaaaa gcagattttg tgttcaattt ccatggaaga cgaaccagga
      241 agcgaaaatg aagcagacac catagttgct tcaccacttg caaaatggag aatcgaattc
      301 tcgaaatcgt ttcagaatta cttagacaga tctgctccta acattgttcg aagatggctt
      361 gtgactttag tcgctgcagt gatctatatc tatagggttt actctgttta tggatacttc
      421 gttatctctt atggcttagc tacttatatc ttaaatctct tgattggttt cctttcccct
      481 aaagttgatc ctgaacttga agctttggat cctgattctt tacctgttga tgagtctgat
      541 gagtataagc cctttgttcg tcgtcttcct gagttcaagt tctggtatgc agcgactaaa
      601 gcatttgttg ttgcatttgt gatgacattc ttctctttcc tggatgtgcc tgtgttctgg
      661 ccgatcttgt tgtgttactg gttggttttg tattctttaa ctatgaaacg cttaatcgtg
      721 cacatgttca agtatagata ctttcctttc gatgtaagaa agcctgtgaa gctgctcaag
      781 tttcttgtaa acagtgtcct gaccttttta agactcaaga agggtgatgg tggagatgat
      841 aggcccagca gcagcaattc atctcaggga aatgaaaaac aagattagat gcgaacagta
      901 gatcaggtac tgatctcgac gtggtgatag gcgaagcaag aaaggataca aactaaggat
      961 atcaaagtaa aatatactat agccatgctg gtggaatagg aaaacaaagt tcttgaagct
     1021 taacagaact aagaaatctc tctgagtttt gagtaatctc ctgcattttc cggtttttgc
     1081 attgtaatgt gtaacagtgt attttacaat tatacgttta aatgaatttg ggaatcacaa
     1141 gtaggaaaaa gtattcttta cagttccagg acttggatac tactctggac acaactaatc
     1201 acacaaagct gtgttgacag cctccaatac caagcactgg tccaaatctc tttgcagaaa
     1261 cagatacaga ttggtcatca tactcggaga actgtgtgga ctcgagtgta cttacttgac
     1321 ttcc
//
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