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    sks18 SKU5 similar 18 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843912, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sks18
    Official Full Name
    SKU5 similar 18
    Primary source
    TAIR:AT1G75790
    Locus tag
    AT1G75790
    See related
    Araport:AT1G75790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A5.2; F10A5_2; SKU5 similar 18; SKU5 similar 18
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    Genomic context

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    See sks18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (28454781..28457528, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene protein TUB21 Neighboring gene tubulin beta-1 chain Neighboring gene Pathogenesis-related thaumatin superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106229.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKU5 similar 18
    NP_177707.1
    • SKU5 similar 18 (sks18); FUNCTIONS IN: pectinesterase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 4 (TAIR:AT4G22010.1); Has 5415 Blast hits to 5364 proteins in 985 species: Archae - 6; Bacteria - 1763; Metazoa - 267; Fungi - 1922; Plants - 1275; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28454781..28457528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106229.2 → NP_177707.1  SKU5 similar 18 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177707.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEI7, Q1PFD0, Q8L8N6
      Conserved Domains (1) summary
      PLN02168
      Location:1 → 545
      PLN02168; copper ion binding / pectinesterase
    Nucleotide Protein
    Heading Accession and Version

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