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SKU5 similar 18 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_177707.1

Identical Proteins FASTA Graphics 

LOCUS       NP_177707                545 aa            linear   PLN 20-OCT-2022
DEFINITION  SKU5 similar 18 [Arabidopsis thaliana].
ACCESSION   NP_177707
VERSION     NP_177707.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_106229.2
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 545)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (residues 1 to 545)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 545)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 545)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (residues 1 to 545)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE35759.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     Protein         1..545
                     /product="SKU5 similar 18"
                     /calculated_mol_wt=61250
     Region          1..545
                     /region_name="PLN02168"
                     /note="copper ion binding / pectinesterase"
                     /db_xref="CDD:215113"
     CDS             1..545
                     /gene="sks18"
                     /locus_tag="AT1G75790"
                     /gene_synonym="F10A5.2; F10A5_2; SKU5 similar 18; SKU5
                     similar 18"
                     /coded_by="NM_106229.2:141..1778"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR378641.1,INSD:DR292539.1,INSD:DR292540.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:DQ652935.1,INSD:AY088897.1,INSD:DQ446433.1,
                     INSD:BX814551.1"
                     /note="SKU5 similar 18 (sks18); FUNCTIONS IN:
                     pectinesterase activity, copper ion binding; INVOLVED IN:
                     oxidation reduction; LOCATED IN: endomembrane system;
                     EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4
                     anthesis, petal differentiation and expansion stage, E
                     expanded cotyledon stage; CONTAINS InterPro DOMAIN/s:
                     Multicopper oxidase, type 3 (InterPro:IPR011707),
                     Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type
                     2 (InterPro:IPR011706), Multicopper oxidase, type 1
                     (InterPro:IPR001117); BEST Arabidopsis thaliana protein
                     match is: SKU5 similar 4 (TAIR:AT4G22010.1); Has 5415
                     Blast hits to 5364 proteins in 985 species: Archae - 6;
                     Bacteria - 1763; Metazoa - 267; Fungi - 1922; Plants -
                     1275; Viruses - 0; Other Eukaryotes - 182 (source: NCBI
                     BLink)."
                     /db_xref="Araport:AT1G75790"
                     /db_xref="GeneID:843912"
                     /db_xref="TAIR:AT1G75790"
ORIGIN      
        1 mrhvfvevlv lislvilels yafapissyq wvvsysqrfi lggnkqvivi ndmfpgpiln
       61 atandiivvn ifnnlpepfl mtwnglqlrk nswqdgvrgt ncpilpgtnw tyrfqvkdqi
      121 gsyfyfptll lqkaaggyga iriyppelvp vpfpkpdeey diligdwfyl dhtvmrasld
      181 aghslpnpdg ilfngrgpee tffafepgkt yrlrisnvgl ktclnfriqd hdmllveteg
      241 tyvqkrvyss ldihvgqsys ilvtaktdpv giyrsyyifa tarftdsylg gialirypgs
      301 pldpvgqgpl apalqdfgss veqalsirmd lnvgaarsnp qgsyhygrin vtrtiilhnd
      361 vmlssgklry tingvsfvyp etplklvdhf qlndtiipgm fpvypsnktp tlgtsvvdih
      421 ykdfihivfq nplfglesyh idgynffvvg ygfgawsesk kagynlvdav srstvqvypy
      481 swtailiamd nqgmwnvrsq kaeqwylgqe lymrvkgege edpstipvrd enpipgnvir
      541 cgkvr
//
Feature
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Protein clusters for NP_177707.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the sks18 gene (NM_106229.2).

More about the sks18 gene

  • sks18 gene
    Also Known As: AT1G75790, F10A5.2, F10...

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