LOCUS NP_177707 545 aa linear PLN 20-OCT-2022
DEFINITION SKU5 similar 18 [Arabidopsis thaliana].
ACCESSION NP_177707
VERSION NP_177707.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_106229.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 545)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (residues 1 to 545)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 545)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 545)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (residues 1 to 545)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE35759.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..545
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
Protein 1..545
/product="SKU5 similar 18"
/calculated_mol_wt=61250
Region 1..545
/region_name="PLN02168"
/note="copper ion binding / pectinesterase"
/db_xref="CDD:215113"
CDS 1..545
/gene="sks18"
/locus_tag="AT1G75790"
/gene_synonym="F10A5.2; F10A5_2; SKU5 similar 18; SKU5
similar 18"
/coded_by="NM_106229.2:141..1778"
/inference="Similar to RNA sequence,
EST:INSD:DR378641.1,INSD:DR292539.1,INSD:DR292540.1"
/inference="similar to RNA sequence,
mRNA:INSD:DQ652935.1,INSD:AY088897.1,INSD:DQ446433.1,
INSD:BX814551.1"
/note="SKU5 similar 18 (sks18); FUNCTIONS IN:
pectinesterase activity, copper ion binding; INVOLVED IN:
oxidation reduction; LOCATED IN: endomembrane system;
EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage, E
expanded cotyledon stage; CONTAINS InterPro DOMAIN/s:
Multicopper oxidase, type 3 (InterPro:IPR011707),
Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type
2 (InterPro:IPR011706), Multicopper oxidase, type 1
(InterPro:IPR001117); BEST Arabidopsis thaliana protein
match is: SKU5 similar 4 (TAIR:AT4G22010.1); Has 5415
Blast hits to 5364 proteins in 985 species: Archae - 6;
Bacteria - 1763; Metazoa - 267; Fungi - 1922; Plants -
1275; Viruses - 0; Other Eukaryotes - 182 (source: NCBI
BLink)."
/db_xref="Araport:AT1G75790"
/db_xref="GeneID:843912"
/db_xref="TAIR:AT1G75790"
ORIGIN
1 mrhvfvevlv lislvilels yafapissyq wvvsysqrfi lggnkqvivi ndmfpgpiln
61 atandiivvn ifnnlpepfl mtwnglqlrk nswqdgvrgt ncpilpgtnw tyrfqvkdqi
121 gsyfyfptll lqkaaggyga iriyppelvp vpfpkpdeey diligdwfyl dhtvmrasld
181 aghslpnpdg ilfngrgpee tffafepgkt yrlrisnvgl ktclnfriqd hdmllveteg
241 tyvqkrvyss ldihvgqsys ilvtaktdpv giyrsyyifa tarftdsylg gialirypgs
301 pldpvgqgpl apalqdfgss veqalsirmd lnvgaarsnp qgsyhygrin vtrtiilhnd
361 vmlssgklry tingvsfvyp etplklvdhf qlndtiipgm fpvypsnktp tlgtsvvdih
421 ykdfihivfq nplfglesyh idgynffvvg ygfgawsesk kagynlvdav srstvqvypy
481 swtailiamd nqgmwnvrsq kaeqwylgqe lymrvkgege edpstipvrd enpipgnvir
541 cgkvr
//