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    P58IPK DnaJ P58IPK-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831917, updated on 18-Sep-2024

    Summary

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    Official Symbol
    P58IPK
    Official Full Name
    DnaJ P58IPK-like protein
    Primary source
    TAIR:AT5G03160
    Locus tag
    AT5G03160
    See related
    Araport:AT5G03160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATP58IPK; F15A17.190; F15A17_190; homolog of mamallian P58IPK
    Summary
    J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast.
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    Genomic context

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    See P58IPK in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (750101..752805)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene C2H2-like zinc finger protein Neighboring gene RING/U-box superfamily protein Neighboring gene FASCICLIN-like arabinogalactan-protein 11 Neighboring gene ncRNA Neighboring gene peptide upstream protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. P58(IPK), a plant ortholog of double-stranded RNA-dependent protein kinase PKR inhibitor, functions in viral pathogenesis. Bilgin DD, et al. Dev Cell, 2003 May. PMID 12737801
    2. Different sets of ER-resident J-proteins regulate distinct polar nuclear-membrane fusion events in Arabidopsis thaliana. Maruyama D, et al. Plant Cell Physiol, 2014 Nov. PMID 25231968
    3. Arabidopsis thaliana has a set of J proteins in the endoplasmic reticulum that are conserved from yeast to animals and plants. Yamamoto M, et al. Plant Cell Physiol, 2008 Oct. PMID 18718935
    4. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    5. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ATP58IPK is expressed in female gametophytes. AtERDJ3A, AtERDJ3B, and AtP58 regulate distinct polar nuclear-membrane fusion events in Arabidopsis thaliana.
      Title: Different sets of ER-resident J-proteins regulate distinct polar nuclear-membrane fusion events in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_120394.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation by host of viral process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DnaJ P58IPK-like protein
    NP_195936.1
    • homolog of mamallian P58IPK (P58IPK); FUNCTIONS IN: heat shock protein binding, binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum lumen; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 32693 Blast hits to 30813 proteins in 3428 species: Archae - 634; Bacteria - 13349; Metazoa - 5479; Fungi - 2550; Plants - 3479; Viruses - 15; Other Eukaryotes - 7187 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      750101..752805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120394.4 → NP_195936.1  DnaJ P58IPK-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195936.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LYW9
      UniProtKB/TrEMBL
      A0A178U6U1, A0A5S9Y0X5
      Conserved Domains (4) summary
      PLN03088
      Location:39 → 147
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      COG0484
      Location:365 → 437
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      TIGR02917
      Location:180 → 345
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:282 → 312
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYW9.1

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