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    cotton fiber, putative (DUF761) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837663, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cotton fiber, putative (DUF761)
    Primary source
    TAIR:AT1G11220
    Locus tag
    AT1G11220
    See related
    Araport:AT1G11220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28P6.12; T28P6_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (3759862..3761461, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene cotton fiber protein, putative (DUF761) Neighboring gene transmembrane protein, putative (DUF761) Neighboring gene ribosomal RNA-processing protein Neighboring gene syntaxin of plants 125

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100994.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cotton fiber, putative (DUF761)
    NP_172588.1
    • Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11230.1); Has 88 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3759862..3761461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331973.1 → NP_001322607.1  cotton fiber, putative (DUF761) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DSC6, Q9SXA8

    2. NM_100994.3 → NP_172588.1  cotton fiber, putative (DUF761) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172588.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654E9Y7, A0A7G2DSC6, F4I7E9
      Conserved Domains (2) summary
      pfam05553
      Location:284 → 307
      DUF761; Cotton fibre expressed protein
      pfam14364
      Location:40 → 72
      DUF4408; Domain of unknown function (DUF4408)
    Nucleotide Protein
    Heading Accession and Version

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