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Conserved domains on  [gi|15220310|ref|NP_172588|]
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cotton fiber, putative (DUF761) [Arabidopsis thaliana]

Protein Classification

DUF4408 and DUF761 domain-containing protein( domain architecture ID 10627271)

DUF4408 and DUF761 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4408 pfam14364
Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the ...
 40-72 2.13e-12

Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins.


:

Pssm-ID: 405114  Cd Length: 33  Bit Score: 60.19  E-value: 2.13e-12
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15220310    40 PIFWSSFLSWLKPPYLFVAINVIITIIMASSKF 72
Cdd:pfam14364   1 PSLWSSLRSWLTPPYLFVVLNLIIITIAASSRL 33
DUF761 super family cl05229
Cotton fibre expressed protein; This family consists of several plant proteins of unknown ...
 284-307 1.44e-04

Cotton fibre expressed protein; This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences, found in Arabidopsis thaliana, are uncharacterized.


The actual alignment was detected with superfamily member pfam05553:

Pssm-ID: 461675  Cd Length: 35  Bit Score: 38.50  E-value: 1.44e-04
                          10        20
                  ....*....|....*....|....*...
gi 15220310   284 REELNRRVEAFIKKCKE----ERLESLK 307
Cdd:pfam05553   1 DEEVDAKAEAFIAKFREqlrlQRQESIL 28
 
Name Accession Description Interval E-value
DUF4408 pfam14364
Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the ...
 40-72 2.13e-12

Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins.


Pssm-ID: 405114  Cd Length: 33  Bit Score: 60.19  E-value: 2.13e-12
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15220310    40 PIFWSSFLSWLKPPYLFVAINVIITIIMASSKF 72
Cdd:pfam14364   1 PSLWSSLRSWLTPPYLFVVLNLIIITIAASSRL 33
DUF761 pfam05553
Cotton fibre expressed protein; This family consists of several plant proteins of unknown ...
 284-307 1.44e-04

Cotton fibre expressed protein; This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences, found in Arabidopsis thaliana, are uncharacterized.


Pssm-ID: 461675  Cd Length: 35  Bit Score: 38.50  E-value: 1.44e-04
                          10        20
                  ....*....|....*....|....*...
gi 15220310   284 REELNRRVEAFIKKCKE----ERLESLK 307
Cdd:pfam05553   1 DEEVDAKAEAFIAKFREqlrlQRQESIL 28
 
Name Accession Description Interval E-value
DUF4408 pfam14364
Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the ...
 40-72 2.13e-12

Domain of unknown function (DUF4408); This domain is found at the N-terminus of member of the DUF761 family pfam05553. Many members are plant proteins.


Pssm-ID: 405114  Cd Length: 33  Bit Score: 60.19  E-value: 2.13e-12
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15220310    40 PIFWSSFLSWLKPPYLFVAINVIITIIMASSKF 72
Cdd:pfam14364   1 PSLWSSLRSWLTPPYLFVVLNLIIITIAASSRL 33
DUF761 pfam05553
Cotton fibre expressed protein; This family consists of several plant proteins of unknown ...
 284-307 1.44e-04

Cotton fibre expressed protein; This family consists of several plant proteins of unknown function. Three of the sequences (from Gossypium hirsutum) in this family are described as cotton fibre expressed proteins. The remaining sequences, found in Arabidopsis thaliana, are uncharacterized.


Pssm-ID: 461675  Cd Length: 35  Bit Score: 38.50  E-value: 1.44e-04
                          10        20
                  ....*....|....*....|....*...
gi 15220310   284 REELNRRVEAFIKKCKE----ERLESLK 307
Cdd:pfam05553   1 DEEVDAKAEAFIAKFREqlrlQRQESIL 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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