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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001085448.1 → NP_001078917.1 catenin delta-1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks a 5' UTR segment and an alternate exon in the 3' coding region compared to variant 1. The resulting isoform (2) is shorter than isoform 1. Variants 3 and 7 both encode the same isoform (2).
- Source sequence(s)
-
AK133193, AK161790, AL929079, BC043108, BY422861
- Consensus CDS
-
CCDS50623.1
- UniProtKB/TrEMBL
-
D3Z2H2
- Related
- ENSMUSP00000107326.3, ENSMUST00000111697.9
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
NM_001085449.1 → NP_001078918.1 catenin delta-1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) has multiple differences and uses a downstream start codon, compared to variant 1. The resulting protein (isoform 3) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AK161790, AK168453, AL929079, BC043108, BY422861
- Consensus CDS
-
CCDS50621.1
- UniProtKB/TrEMBL
- D3Z7H6, E9Q986
- Related
- ENSMUSP00000107299.3, ENSMUST00000111670.9
- Conserved Domains (2) summary
-
- cd00020
Location:262 → 380
- ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
- sd00043
Location:267 → 292
- ARM; armadillo repeat [structural motif]
-
NM_001085450.1 → NP_001078919.1 catenin delta-1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks a segment in the 5' UTR compared to variant 1. Variants 1, 2, and 6 all encode the same isoform (1).
- Source sequence(s)
-
BC043108, BY422861, CJ174738
- Consensus CDS
-
CCDS16186.1
- UniProtKB/Swiss-Prot
- P30999, Q3TSU9, Q80XQ4, Q8CHF8
- UniProtKB/TrEMBL
-
D3Z2H2
- Related
- ENSMUSP00000107320.2, ENSMUST00000111691.2
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
NM_001085453.2 → NP_001078922.1 catenin delta-1 isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) has multiple differences, compared to variant 1. The resulting protein (isoform 4) is shorter when it is compared to isoform 1. Variant 5 is also known as CAS 1B.
- Source sequence(s)
-
AL928616, AL929079
- Consensus CDS
-
CCDS50622.1
- UniProtKB/TrEMBL
-
E9Q8Z9
- Related
- ENSMUSP00000065252.4, ENSMUST00000066177.10
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
NM_001355064.1 → NP_001341993.1 catenin delta-1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6), as well as variants 1 and 2, encodes isoform 1.
- Source sequence(s)
-
AK133193, AL928616, AL929079
- Consensus CDS
-
CCDS16186.1
- UniProtKB/Swiss-Prot
- P30999, Q3TSU9, Q80XQ4, Q8CHF8
- UniProtKB/TrEMBL
-
D3Z2H2
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
NM_001355065.1 → NP_001341994.1 catenin delta-1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (7), as well as variant 3, encodes isoform 2.
- Source sequence(s)
-
AB093237, AL928616, AL929079
- Consensus CDS
-
CCDS50623.1
- UniProtKB/TrEMBL
-
D3Z2H2
- Related
- ENSMUSP00000042543.7, ENSMUST00000036811.13
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
NM_001355066.1 → NP_001341995.1 catenin delta-1 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AL928616, AL929079
- Consensus CDS
-
CCDS89504.1
- UniProtKB/TrEMBL
- E9Q8Z9, G3X9V2
- Related
- ENSMUSP00000107321.2, ENSMUST00000111692.8
- Conserved Domains (2) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
NM_001355067.1 → NP_001341996.1 catenin delta-1 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AL928616, AL929079
- UniProtKB/TrEMBL
-
D3Z7H6
- Related
- ENSMUSP00000107306.2, ENSMUST00000111677.8
- Conserved Domains (2) summary
-
- smart00185
Location:296 → 336
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:267 → 292
- ARM; armadillo repeat [structural motif]
-
NM_007615.4 → NP_031641.2 catenin delta-1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1, 2, and 6 all encode the same isoform (1).
- Source sequence(s)
-
BC043108, BC054544, BY422861, CJ174738
- Consensus CDS
-
CCDS16186.1
- UniProtKB/Swiss-Prot
- P30999, Q3TSU9, Q80XQ4, Q8CHF8
- UniProtKB/TrEMBL
-
D3Z2H2
- Related
- ENSMUSP00000064518.4, ENSMUST00000067232.10
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
84417440..84489321 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006498630.2 → XP_006498693.1 catenin delta-1 isoform X1
- UniProtKB/TrEMBL
- E9Q8Z8, E9Q904
- Conserved Domains (4) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
XM_006498639.5 → XP_006498702.1 catenin delta-1 isoform X12
- UniProtKB/TrEMBL
- E9Q905, E9Q907
- Related
- ENSMUSP00000107307.2, ENSMUST00000111678.8
- Conserved Domains (3) summary
-
- smart00185
Location:296 → 336
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:531 → 639
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:267 → 292
- ARM; armadillo repeat [structural motif]
-
XM_036157836.1 → XP_036013729.1 catenin delta-1 isoform X11
- UniProtKB/TrEMBL
-
E9Q8Z9
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
XM_006498634.4 → XP_006498697.1 catenin delta-1 isoform X5
- UniProtKB/TrEMBL
- E9Q8Z5, E9Q903
- Related
- ENSMUSP00000107325.2, ENSMUST00000111696.8
- Conserved Domains (2) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_030247019.2 → XP_030102879.1 catenin delta-1 isoform X7
- UniProtKB/TrEMBL
-
E9Q8Z9
- Conserved Domains (2) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_006498632.4 → XP_006498695.1 catenin delta-1 isoform X3
- UniProtKB/TrEMBL
- E9Q8Z6, E9Q901
- Related
- ENSMUSP00000107324.2, ENSMUST00000111695.8
- Conserved Domains (2) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_006498638.3 → XP_006498701.1 catenin delta-1 isoform X9
- UniProtKB/TrEMBL
-
D3Z2H2
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_006498633.4 → XP_006498696.1 catenin delta-1 isoform X4
- UniProtKB/TrEMBL
-
E9Q903
- Related
- ENSMUSP00000107314.2, ENSMUST00000111685.8
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_006498636.4 → XP_006498699.1 catenin delta-1 isoform X6
- UniProtKB/TrEMBL
-
D3Z2H2
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_006498631.4 → XP_006498694.1 catenin delta-1 isoform X2
- UniProtKB/TrEMBL
-
E9Q904
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_006498625.4 → XP_006498688.1 catenin delta-1 isoform X1
- UniProtKB/TrEMBL
- E9Q8Z8, E9Q904
- Related
- ENSMUSP00000107313.2, ENSMUST00000111684.8
- Conserved Domains (4) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
XM_036157835.1 → XP_036013728.1 catenin delta-1 isoform X10
- UniProtKB/TrEMBL
-
E9Q8Z9
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
XM_017315208.3 → XP_017170697.1 catenin delta-1 isoform X8
- UniProtKB/TrEMBL
-
D3Z2H2
- Conserved Domains (3) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
-
XM_006498626.5 → XP_006498689.1 catenin delta-1 isoform X1
- UniProtKB/TrEMBL
- E9Q8Z8, E9Q904
- Related
- ENSMUSP00000107323.2, ENSMUST00000111694.8
- Conserved Domains (4) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
XM_017315179.3 → XP_017170668.1 catenin delta-1 isoform X1
- UniProtKB/TrEMBL
- E9Q8Z8, E9Q904
- Conserved Domains (4) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
XM_036157823.1 → XP_036013716.1 catenin delta-1 isoform X1
- UniProtKB/TrEMBL
- E9Q8Z8, E9Q904
- Conserved Domains (4) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat
-
XM_006498628.5 → XP_006498691.1 catenin delta-1 isoform X1
- UniProtKB/TrEMBL
- E9Q8Z8, E9Q904
- Conserved Domains (4) summary
-
- smart00185
Location:397 → 437
- ARM; Armadillo/beta-catenin-like repeats
- cd13394
Location:632 → 740
- Syo1_like; Fungal symportin 1 (syo1) and similar proteins
- sd00043
Location:368 → 393
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:440 → 481
- Arm; Armadillo/beta-catenin-like repeat