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Conserved domains on  [gi|568915183|ref|XP_006498694|]
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catenin delta-1 isoform X2 [Mus musculus]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 12192474)

armadillo/beta-catenin-like repeat-containing protein similar to catenin delta, plakophilin and armadillo repeat-containing protein

CATH:  1.25.10.10
Gene Ontology:  GO:0098609|GO:0005515
PubMed:  12946625|9770300|9298899|20688255
SCOP:  3000116

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 440-481 1.12e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 45.91  E-value: 1.12e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 568915183  440 DQDNKIAIKNCDGVPALVRLLrKARDMDLTEVITGTLWNLSS 481
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLL-SSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 397-437 1.24e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


:

Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 45.88  E-value: 1.24e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 568915183   397 NDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNISF 437
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 703-738 4.44e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


:

Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 44.34  E-value: 4.44e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568915183   703 RSALRQEKALSAIAELLTSEHERVVKAASGALRNLA 738
Cdd:smart00185   5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Syo1_like super family cl23709
Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes ...
 632-740 2.06e-03

Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1).


The actual alignment was detected with superfamily member cd13394:

Pssm-ID: 474028 [Multi-domain]  Cd Length: 597  Bit Score: 41.91  E-value: 2.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568915183 632 GKKPTEDPANDTVDFPKRTSPArgyellfQPevvriyisLLKE--SKTPAILEASAGAIQNLCagrwtYGRYIRSALRQE 709
Cdd:cd13394   18 GKPSSHSGKDAEKDEALREKKI-------LP--------LLEKlqSPSANDRSMALGAISNLI-----EDPSMRKLLLKE 77

                         90       100       110
                 ....*....|....*....|....*....|..
gi 568915183 710 KALSAIAE-LLTSEHERVVKAASGALRNLAVD 740
Cdd:cd13394   78 KLVQILIErLLDDSNTEVVVEAFGALRNLAIE 109
 
Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 440-481 1.12e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 45.91  E-value: 1.12e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 568915183  440 DQDNKIAIKNCDGVPALVRLLrKARDMDLTEVITGTLWNLSS 481
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLL-SSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 397-437 1.24e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 45.88  E-value: 1.24e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 568915183   397 NDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNISF 437
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 440-481 1.42e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 45.50  E-value: 1.42e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 568915183   440 DQDNKIAIKNCDGVPALVRLLRKaRDMDLTEVITGTLWNLSS 481
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 703-738 4.44e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 44.34  E-value: 4.44e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568915183   703 RSALRQEKALSAIAELLTSEHERVVKAASGALRNLA 738
Cdd:smart00185   5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 397-436 1.22e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.83  E-value: 1.22e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 568915183  397 NDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNIS 436
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 703-738 4.26e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 41.29  E-value: 4.26e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 568915183  703 RSALRQEKALSAIAELLTSEHERVVKAASGALRNLA 738
Cdd:pfam00514   5 KQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Syo1_like cd13394
Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes ...
 632-740 2.06e-03

Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1).


Pssm-ID: 240521 [Multi-domain]  Cd Length: 597  Bit Score: 41.91  E-value: 2.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568915183 632 GKKPTEDPANDTVDFPKRTSPArgyellfQPevvriyisLLKE--SKTPAILEASAGAIQNLCagrwtYGRYIRSALRQE 709
Cdd:cd13394   18 GKPSSHSGKDAEKDEALREKKI-------LP--------LLEKlqSPSANDRSMALGAISNLI-----EDPSMRKLLLKE 77

                         90       100       110
                 ....*....|....*....|....*....|..
gi 568915183 710 KALSAIAE-LLTSEHERVVKAASGALRNLAVD 740
Cdd:cd13394   78 KLVQILIErLLDDSNTEVVVEAFGALRNLAIE 109
 
Name Accession Description Interval E-value
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 440-481 1.12e-06

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 45.91  E-value: 1.12e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 568915183  440 DQDNKIAIKNCDGVPALVRLLrKARDMDLTEVITGTLWNLSS 481
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLL-SSPDEEVQEEAAWALSNLAA 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 397-437 1.24e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 45.88  E-value: 1.24e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 568915183   397 NDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNISF 437
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 440-481 1.42e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 45.50  E-value: 1.42e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 568915183   440 DQDNKIAIKNCDGVPALVRLLRKaRDMDLTEVITGTLWNLSS 481
Cdd:smart00185   1 DDENKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41
ARM smart00185
Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form ...
 703-738 4.44e-06

Armadillo/beta-catenin-like repeats; Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.


Pssm-ID: 214547 [Multi-domain]  Cd Length: 41  Bit Score: 44.34  E-value: 4.44e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568915183   703 RSALRQEKALSAIAELLTSEHERVVKAASGALRNLA 738
Cdd:smart00185   5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 397-436 1.22e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 42.83  E-value: 1.22e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 568915183  397 NDKVKTDVRKLKGIPILVGLLDHPKKEVHLGACGALKNIS 436
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 703-738 4.26e-05

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 41.29  E-value: 4.26e-05
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 568915183  703 RSALRQEKALSAIAELLTSEHERVVKAASGALRNLA 738
Cdd:pfam00514   5 KQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLA 40
Syo1_like cd13394
Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes ...
 632-740 2.06e-03

Fungal symportin 1 (syo1) and similar proteins; This family of eukaryotic proteins includes Saccharomyces cerevisiae Ydl063c and Chaetomium thermophilum Syo1, which mediate the co-import of two ribosomal proteins, Rpl5 and Rpl11 (which both interact with 5S rRNA) into the nucleus. Import precedes their association with rRNA and subsequent ribosome assembly in the nucleolus. The primary structure of syo1 is a mixture of Armadillo- (ARM, N-terminal part of syo1) and HEAT-repeats (C-terminal part of syo1).


Pssm-ID: 240521 [Multi-domain]  Cd Length: 597  Bit Score: 41.91  E-value: 2.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568915183 632 GKKPTEDPANDTVDFPKRTSPArgyellfQPevvriyisLLKE--SKTPAILEASAGAIQNLCagrwtYGRYIRSALRQE 709
Cdd:cd13394   18 GKPSSHSGKDAEKDEALREKKI-------LP--------LLEKlqSPSANDRSMALGAISNLI-----EDPSMRKLLLKE 77

                         90       100       110
                 ....*....|....*....|....*....|..
gi 568915183 710 KALSAIAE-LLTSEHERVVKAASGALRNLAVD 740
Cdd:cd13394   78 KLVQILIErLLDDSNTEVVVEAFGALRNLAIE 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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