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    PKP4 plakophilin 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698576, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PKP4provided by VGNC
    Official Full Name
    plakophilin 4provided by VGNC
    Primary source
    VGNC:VGNC:76153
    See related
    Ensembl:ENSMMUG00000011638
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PKP4 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (45531567..45760771)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (45192771..45421357)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene coiled-coil domain containing 148 Neighboring gene heterogeneous nuclear ribonucleoprotein D-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene uncharacterized LOC114671332

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plakophilin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266450.1 → NP_001253379.1  plakophilin-4

      See identical proteins and their annotated locations for NP_001253379.1

      Status: PROVISIONAL

      Source sequence(s)
      JV048501
      UniProtKB/TrEMBL
      F6PTU9, F6PTX6, H9G110, I0FVU6
      Related
      ENSMMUP00000015281.4, ENSMMUT00000016310.4
      Conserved Domains (5) summary
      smart00185
      Location:603 → 644
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:848 → 969
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:194 → 347
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:530 → 555
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:559 → 598
      Arm; Armadillo/beta-catenin-like repeat

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      45531567..45760771
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028830426.1 → XP_028686259.1  plakophilin-4 isoform X1

      UniProtKB/TrEMBL
      H9G110
      Conserved Domains (5) summary
      smart00185
      Location:614 → 655
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:859 → 980
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:205 → 358
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:541 → 566
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:570 → 609
      Arm; Armadillo/beta-catenin-like repeat

    2. XM_028830430.1 → XP_028686263.1  plakophilin-4 isoform X5

      UniProtKB/TrEMBL
      F6PTU9, F6PTX6, H9G110, I0FVU6
      Related
      ENSMMUP00000015285.3, ENSMMUT00000016314.4
      Conserved Domains (5) summary
      smart00185
      Location:603 → 644
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:848 → 969
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:194 → 347
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:530 → 555
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:559 → 598
      Arm; Armadillo/beta-catenin-like repeat

    3. XM_028830431.1 → XP_028686264.1  plakophilin-4 isoform X7

      UniProtKB/TrEMBL
      H9G111, I0FVU7
      Conserved Domains (5) summary
      smart00185
      Location:601 → 642
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:846 → 967
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:192 → 345
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:528 → 553
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:557 → 596
      Arm; Armadillo/beta-catenin-like repeat

    4. XM_015110155.2 → XP_014965641.1  plakophilin-4 isoform X12

      UniProtKB/TrEMBL
      F6PUI9
      Conserved Domains (5) summary
      smart00185
      Location:455 → 496
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:700 → 821
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:46 → 199
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:382 → 407
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:411 → 450
      Arm; Armadillo/beta-catenin-like repeat

    5. XM_028830425.1 → XP_028686258.1  plakophilin-4 isoform X1

      UniProtKB/TrEMBL
      H9G110
      Conserved Domains (5) summary
      smart00185
      Location:614 → 655
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:859 → 980
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:205 → 358
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:541 → 566
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:570 → 609
      Arm; Armadillo/beta-catenin-like repeat

    6. XM_028830432.1 → XP_028686265.1  plakophilin-4 isoform X8

      UniProtKB/TrEMBL
      I0FVU8
      Conserved Domains (5) summary
      smart00185
      Location:876 → 911
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:859 → 980
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:205 → 358
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:541 → 566
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:570 → 609
      Arm; Armadillo/beta-catenin-like repeat

    7. XM_028830434.1 → XP_028686267.1  plakophilin-4 isoform X11

      UniProtKB/TrEMBL
      I0FVU8
      Conserved Domains (5) summary
      smart00185
      Location:876 → 911
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:859 → 980
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:205 → 358
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:541 → 566
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:570 → 609
      Arm; Armadillo/beta-catenin-like repeat

    8. XM_028830427.1 → XP_028686260.1  plakophilin-4 isoform X2

      UniProtKB/TrEMBL
      H9G110
      Conserved Domains (5) summary
      smart00185
      Location:613 → 654
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:858 → 979
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:205 → 358
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:540 → 565
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:569 → 608
      Arm; Armadillo/beta-catenin-like repeat

    9. XM_028830428.1 → XP_028686261.1  plakophilin-4 isoform X3

      UniProtKB/TrEMBL
      H9G111
      Conserved Domains (5) summary
      smart00185
      Location:874 → 909
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:857 → 978
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:203 → 356
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:539 → 564
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:568 → 607
      Arm; Armadillo/beta-catenin-like repeat

    10. XM_028830433.1 → XP_028686266.1  plakophilin-4 isoform X9

      UniProtKB/TrEMBL
      I0FVU8
      Conserved Domains (5) summary
      smart00185
      Location:874 → 909
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:857 → 978
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:203 → 356
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:539 → 564
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:568 → 607
      Arm; Armadillo/beta-catenin-like repeat

    11. XM_028830429.1 → XP_028686262.1  plakophilin-4 isoform X4

      UniProtKB/TrEMBL
      H9G111
      Conserved Domains (5) summary
      smart00185
      Location:873 → 908
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:856 → 977
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:203 → 356
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:538 → 563
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:567 → 606
      Arm; Armadillo/beta-catenin-like repeat

    12. XM_015110152.2 → XP_014965638.1  plakophilin-4 isoform X10

      UniProtKB/TrEMBL
      F6PTY4, I0FVU8
      Related
      ENSMMUP00000015280.4, ENSMMUT00000016309.4
      Conserved Domains (2) summary
      cd00020
      Location:522 → 644
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00043
      Location:530 → 555
      ARM; armadillo repeat [structural motif]

    13. XM_015110148.2 → XP_014965634.1  plakophilin-4 isoform X6

      UniProtKB/TrEMBL
      H9G110
      Conserved Domains (2) summary
      cd00020
      Location:521 → 643
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00043
      Location:529 → 554
      ARM; armadillo repeat [structural motif]

    14. XM_028830436.1 → XP_028686269.1  plakophilin-4 isoform X13

      Conserved Domains (4) summary
      smart00185
      Location:522 → 557
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:505 → 626
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:187 → 212
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:216 → 255
      Arm; Armadillo/beta-catenin-like repeat

    15. XM_015110150.2 → XP_014965636.1  plakophilin-4 isoform X7

      UniProtKB/TrEMBL
      H9G111, I0FVU7
      Conserved Domains (5) summary
      smart00185
      Location:601 → 642
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:846 → 967
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:192 → 345
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:528 → 553
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:557 → 596
      Arm; Armadillo/beta-catenin-like repeat

    16. XM_028830435.1 → XP_028686268.1  plakophilin-4 isoform X12

      UniProtKB/TrEMBL
      F6PUI9
      Conserved Domains (5) summary
      smart00185
      Location:455 → 496
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:700 → 821
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:46 → 199
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:382 → 407
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:411 → 450
      Arm; Armadillo/beta-catenin-like repeat

    17. XM_015110156.2 → XP_014965642.1  plakophilin-4 isoform X12

      UniProtKB/TrEMBL
      F6PUI9
      Conserved Domains (5) summary
      smart00185
      Location:455 → 496
      ARM; Armadillo/beta-catenin-like repeats
      PLN03200
      Location:700 → 821
      PLN03200; cellulose synthase-interactive protein; Provisional
      PHA03247
      Location:46 → 199
      PHA03247; large tegument protein UL36; Provisional
      sd00043
      Location:382 → 407
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:411 → 450
      Arm; Armadillo/beta-catenin-like repeat
    Nucleotide Protein
    Heading Accession and Version

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