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    THBS1 thrombospondin 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705413, updated on 17-Aug-2024

    Summary

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    Official Symbol
    THBS1provided by VGNC
    Official Full Name
    thrombospondin 1provided by VGNC
    Primary source
    VGNC:VGNC:78344
    See related
    Ensembl:ENSMMUG00000006035
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See THBS1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (15979849..15997008)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (15889415..15906828)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene chromosome 7 C15orf54 homolog Neighboring gene uncharacterized LOC106999140 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene cytochrome c oxidase subunit NDUFA4 pseudogene Neighboring gene uncharacterized LOC114679378

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thrombospondin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      15979849..15997008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015141916.2 → XP_014997402.1  thrombospondin-1

      UniProtKB/TrEMBL
      F6WIY2, G7MWM2
      Related
      ENSMMUP00000007925.4, ENSMMUT00000008436.4
      Conserved Domains (11) summary
      smart00209
      Location:438 → 490
      TSP1; Thrombospondin type 1 repeats
      smart00210
      Location:26 → 221
      TSPN; Thrombospondin N-terminal -like domains
      sd00001
      Location:845 → 882
      TSP3; TSP3 repeat_long [structural motif]
      sd00002
      Location:787 → 821
      TSP3; TSP3 repeat_long [structural motif]
      sd00003
      Location:691 → 726
      TSP3_1C; TSP3 repeat_1C [structural motif]
      pfam00093
      Location:318 → 372
      VWC; von Willebrand factor type C domain
      pfam00090
      Location:383 → 428
      TSP_1; Thrombospondin type 1 domain
      pfam02412
      Location:846 → 882
      TSP_3; Thrombospondin type 3 repeat
      pfam05735
      Location:972 → 1169
      TSP_C; Thrombospondin C-terminal region
      pfam12947
      Location:650 → 689
      EGF_3; EGF domain
      NF000535
      Location:691 → 891
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    Nucleotide Protein
    Heading Accession and Version

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