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    ZKSCAN5 zinc finger with KRAB and SCAN domains 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718769, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZKSCAN5provided by VGNC
    Official Full Name
    zinc finger with KRAB and SCAN domains 5provided by VGNC
    Primary source
    VGNC:VGNC:78826
    See related
    Ensembl:ENSMMUG00000020141
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZKSCAN5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (41616135..41646760)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (124947116..124978598)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106997571 Neighboring gene zinc finger protein 789 Neighboring gene zinc finger protein 394 Neighboring gene uncharacterized LOC114676873 Neighboring gene family with sequence similarity 200 member A Neighboring gene zinc finger protein 655

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Macaca specific exon creation event generates a novel ZKSCAN5 transcript. Kim YH, et al. Gene, 2016 Feb 15. PMID 26657034
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein with KRAB and SCAN domains 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      41616135..41646760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015134389.2 → XP_014989875.2  zinc finger protein with KRAB and SCAN domains 5 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q0W0
      Related
      ENSMMUP00000067415.1, ENSMMUT00000099061.1
      Conserved Domains (5) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:539 → 837
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:551 → 571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:214 → 258
      KRAB; KRAB box
      pfam13465
      Location:388 → 412
      zf-H2C2_2; Zinc-finger double domain

    2. XM_015134387.2 → XP_014989873.2  zinc finger protein with KRAB and SCAN domains 5 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q0W0
      Related
      ENSMMUP00000041672.2, ENSMMUT00000054198.2
      Conserved Domains (5) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:539 → 837
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:551 → 571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:214 → 258
      KRAB; KRAB box
      pfam13465
      Location:388 → 412
      zf-H2C2_2; Zinc-finger double domain

    3. XM_015134392.2 → XP_014989878.2  zinc finger protein with KRAB and SCAN domains 5 isoform X3

      UniProtKB/TrEMBL
      A0A5F8AR57
      Related
      ENSMMUP00000080337.1, ENSMMUT00000089766.1
      Conserved Domains (5) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:466 → 764
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:181 → 352
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:478 → 498
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:315 → 339
      zf-H2C2_2; Zinc-finger double domain

    4. XM_015134393.2 → XP_014989879.2  zinc finger protein with KRAB and SCAN domains 5 isoform X4

      UniProtKB/TrEMBL
      F6TZP9
      Related
      ENSMMUP00000026513.4, ENSMMUT00000028333.4
      Conserved Domains (4) summary
      COG5048
      Location:390 → 688
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:402 → 422
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:239 → 263
      zf-H2C2_2; Zinc-finger double domain
      cl02581
      Location:73 → 111
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    5. XM_015134391.2 → XP_014989877.2  zinc finger protein with KRAB and SCAN domains 5 isoform X2

      Conserved Domains (5) summary
      smart00431
      Location:46 → 155
      SCAN; leucine rich region
      COG5048
      Location:538 → 836
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:550 → 570
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:213 → 257
      KRAB; KRAB box
      pfam13465
      Location:387 → 411
      zf-H2C2_2; Zinc-finger double domain

    6. XM_028845558.1 → XP_028701391.1  zinc finger protein with KRAB and SCAN domains 5 isoform X5

      Conserved Domains (3) summary
      COG5048
      Location:275 → 573
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:287 → 307
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:124 → 148
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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