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    lys-9 Glycoside hydrolase family 25 protein [ Caenorhabditis elegans ]

    Gene ID: 183772, updated on 9-Dec-2024

    Summary

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    Official Symbol
    lys-9
    Official Full Name
    Glycoside hydrolase family 25 protein
    Primary source
    WormBase:WBGene00003098
    Locus tag
    CELE_C54C8.6
    See related
    AllianceGenome:WB:WBGene00003098
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable hydrolase activity. Predicted to be involved in innate immune response and signal transduction. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See lys-9 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (12454853..12455826, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase domain-containing protein Neighboring gene Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase Neighboring gene Neuropeptide-Like Protein Neighboring gene C-type LECtin Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification and adaptive sequence evolution of Caenorhabditis lysozymes (Nematoda: Rhabditidae). Schulenburg H, et al. BMC Evol Biol, 2008 Apr 19. PMID 18423043, Free PMC Article
    2. Inducible antibacterial defense system in C. elegans. Mallo GV, et al. Curr Biol, 2002 Jul 23. PMID 12176330
    3. Responses to infection and possible recognition strategies in the innate immune system of Caenorhabditis elegans. Nicholas HR, et al. Mol Immunol, 2004 Jul. PMID 15183927
    4. Evolution of the innate immune system: the worm perspective. Schulenburg H, et al. Immunol Rev, 2004 Apr. PMID 15199953
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in response to stress IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Glycoside hydrolase family 25 protein
    NP_493161.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      12454853..12455826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060760.2 → NP_493161.2  LOW QUALITY PROTEIN: Glycoside hydrolase family 25 protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_493161.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O02233
      Conserved Domains (1) summary
      cl10448
      Location:21 → 221
      GH25_muramidase; Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. ...
    Nucleotide Protein
    Heading Accession and Version

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