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    ubxn10 UBX domain protein 10 [ Danio rerio (zebrafish) ]

    Gene ID: 751736, updated on 9-Dec-2024

    Summary

    Official Symbol
    ubxn10provided by ZNC
    Official Full Name
    UBX domain protein 10provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060825-319
    See related
    Ensembl:ENSDARG00000052535 AllianceGenome:ZFIN:ZDB-GENE-060825-319
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:153648
    Summary
    Predicted to enable ubiquitin binding activity. Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in cilium. Predicted to be part of intraciliary transport particle B. Predicted to be active in endoplasmic reticulum. Orthologous to human UBXN10 (UBX domain protein 10). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See ubxn10 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (37090903..37094205)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (36987616..36991543)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 11 Neighboring gene ceramide-1-phosphate transfer protein Neighboring gene DEAD-box helicase 19a Neighboring gene von Willebrand factor A domain containing 5B1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC153648

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function  
    enables ubiquitin binding  
    Process Evidence Code Pubs
    involved_in ERAD pathway  
    acts_upstream_of_or_within cell projection organization  
    involved_in cilium assembly  
    acts_upstream_of_or_within determination of heart left/right asymmetry PubMed 
    Component Evidence Code Pubs
    located_in cell projection  
    located_in cilium  
    located_in cilium  
    is_active_in endoplasmic reticulum  
    part_of intraciliary transport particle B  

    General protein information

    Preferred Names
    UBX domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045446.2 → NP_001038911.1  UBX domain-containing protein 10

      See identical proteins and their annotated locations for NP_001038911.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122361
      UniProtKB/Swiss-Prot
      Q0P3Z8
      Related
      ENSDARP00000068895.4, ENSDART00000074406.5
      Conserved Domains (1) summary
      cl25424
      Location:133 → 202
      TGS; The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      37090903..37094205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009297061.4 → XP_009295336.1  UBX domain-containing protein 10 isoform X1

      See identical proteins and their annotated locations for XP_009295336.1

      UniProtKB/TrEMBL
      A0A8M3ANX0
      Conserved Domains (1) summary
      cl00155
      Location:139 → 208
      UBQ; Ubiquitin-like proteins
    2. XM_068216803.1 → XP_068072904.1  UBX domain-containing protein 10 isoform X1

      UniProtKB/TrEMBL
      A0A8M3ANX0
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