atxn7l3a ataxin 7 like 3a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atxn7l3aprovided by ZNC
Official Full Name: ataxin 7 like 3aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030616-253
See related: Ensembl:ENSDARG00000029331 AllianceGenome:ZFIN:ZDB-GENE-030616-253
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: atxn7l3; wu:fj12f07; zgc:136438; zgc:158566; si:dz180g5.4; si:busm1-180g5.4
Summary: Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Predicted to be part of DUBm complex and SAGA complex. Orthologous to human ATXN7L3 (ataxin 7 like 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (20025270..20040636, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (19875452..19891097, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fi49d02.x1 (e-PCR)
- UniSTS:197638

fj12f07.x1 (e-PCR)
- UniSTS:188430

fj38c10.x1 (e-PCR)
- UniSTS:188498

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transcription coactivator activity	IBA Inferred from Biological aspect of Ancestor more info
enables transcription coactivator activity	IEA Inferred from Electronic Annotation more info
enables transcription coactivator activity	ISS Inferred from Sequence or Structural Similarity more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chromatin organization	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of DNA-templated transcription	ISS Inferred from Sequence or Structural Similarity more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of DUBm complex	IBA Inferred from Biological aspect of Ancestor more info
part_of DUBm complex	IEA Inferred from Electronic Annotation more info
part_of SAGA complex	IBA Inferred from Biological aspect of Ancestor more info
part_of SAGA complex	IEA Inferred from Electronic Annotation more info
part_of SAGA complex	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ataxin-7-like protein 3

Names: ataxin 7-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001005396.1 → NP_001005396.1 ataxin-7-like protein 3 isoform 1

See identical proteins and their annotated locations for NP_001005396.1

Status: PROVISIONAL

Source sequence(s)

AL604064

UniProtKB/Swiss-Prot

A1L209

Conserved Domains (1) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)
NM_001040341.2 → NP_001035431.2 ataxin-7-like protein 3 isoform 2

See identical proteins and their annotated locations for NP_001035431.2

Status: PROVISIONAL

Source sequence(s)

BC129298

UniProtKB/Swiss-Prot

A1L209, Q1RM53, Q8JFU1

Related

ENSDARP00000094893.2, ENSDART00000104118.4

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:211 → 240

SCA7; SCA7, zinc-binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007114.7 Reference GRCz11 Primary Assembly

Range

20025270..20040636 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005163869.5 → XP_005163926.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8M2BBE6

Conserved Domains (1) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)