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PREDICTED: Danio rerio ataxin 7 like 3a (atxn7l3a), transcript variant X1, mRNA

NCBI Reference Sequence: XM_005163869.5

FASTA Graphics 

LOCUS       XM_005163869            2599 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio ataxin 7 like 3a (atxn7l3a), transcript
            variant X1, mRNA.
ACCESSION   XM_005163869
VERSION     XM_005163869.5
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007114.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_005163869.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="3"
     gene            1..2599
                     /gene="atxn7l3a"
                     /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4;
                     wu:fj12f07; zgc:136438; zgc:158566"
                     /note="ataxin 7 like 3a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 38 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 138 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:368510"
                     /db_xref="ZFIN:ZDB-GENE-030616-253"
     misc_feature    1
                     /gene="atxn7l3a"
                     /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4;
                     wu:fj12f07; zgc:136438; zgc:158566"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             284..1315
                     /gene="atxn7l3a"
                     /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4;
                     wu:fj12f07; zgc:136438; zgc:158566"
                     /codon_start=1
                     /product="ataxin-7-like protein 3 isoform X1"
                     /protein_id="XP_005163926.1"
                     /db_xref="GeneID:368510"
                     /db_xref="ZFIN:ZDB-GENE-030616-253"
                     /translation="MKMEDMSLSGLDNTKLEALAHDVYSDLVEDACLGLCFEVHRAVK
                     QGYFFLDETDQESMKDFEIVDQPGVDIFGQVYNQWKNKECVCPNCSRSIAASRFAPHL
                     EKCLGMGRNSSRIANRRIASSNNTSKSESDQEDNDDINDNDWSYGSEKKAKKRKSEKN
                     PNSPRRSKSLKHKNGELSGGVNPDMYKYNYSSGISYETLGPEELRSILTTQCGVVSEH
                     TKKMCTRSTLPDADTMLENEAYEPPDGQLIMSRLHWDASSDISPSDSASSKASTNNSE
                     SKRPKKKKPSTLSLTPAGERDKAQERDRIAGSGSSGSSSQNALGLSSRKKRPKLAVPP
                     APSIYDDLN"
     polyA_site      2599
                     /gene="atxn7l3a"
                     /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4;
                     wu:fj12f07; zgc:136438; zgc:158566"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 actagtgatg tctgacagga gccaaaatgg cagcgttgtt ttatttccaa acatcatttt
       61 ttattcgtgt gacctattca gccaggcgcc taaccgtgtt tgttaaataa cgtttccgtt
      121 accttcatac gcacgttttg agtaggtttg ttctctgttg tcgttaacca gaggaacggc
      181 tggtttgtga atgaggcaag actggggccg tttagtcttg tgttttccac tcctcctcct
      241 cctgttgtca acaatgacag ctcccctacc atagttgctg caaatgaaaa tggaggatat
      301 gtctctgtca ggcctggata acaccaagct agaggccttg gctcatgacg tgtactctga
      361 cctagtggaa gatgcctgtt tagggctgtg ctttgaggtg cacagggccg tcaaacaggg
      421 ctatttcttc ctggatgaaa cggaccaaga aagtatgaag gattttgaaa tagtggacca
      481 gcctggtgtg gacatctttg ggcaggtgta caaccagtgg aagaataagg agtgtgtttg
      541 tcccaactgc agccggagca ttgcggcctc tcgcttcgct cctcatctgg agaagtgtct
      601 cggcatgggc cgcaacagca gccgaatagc caaccgcaga atagccagca gtaataacac
      661 aagcaagtca gaaagcgatc aggaagacaa tgacgacatc aatgacaacg actggtccta
      721 tggctcagag aagaaagcca agaagaggaa gtcagaaaag aatccaaact ctcccaggag
      781 atccaaatcc ctgaagcaca agaatggaga gctcagcggc ggtgtaaatc cagacatgta
      841 caagtataac tacagctctg gcataagcta cgagacactg ggacccgagg aactgcgatc
      901 cattctgact acacaatgcg gagttgtgtc agagcataca aagaaaatgt gcactcggtc
      961 aacactacca gacgctgaca ccatgctgga aaacgaggcc tatgaacccc ctgatggcca
     1021 gctcatcatg tcccgtctcc attgggacgc ttcctctgac atctccccat cagactcggc
     1081 atcttcaaaa gccagcacca ataactctga atccaagaga ccgaagaaga agaagcccag
     1141 cacgctttct ctgactcccg caggagagag ggataaagca caggagcgag acagaatagc
     1201 aggcagcggg agcagcggta gcagctccca gaatgctctg ggtctctcaa gtcggaaaaa
     1261 gcgaccaaaa cttgcagttc ctccagcacc cagcatctat gatgacctga actaaggcac
     1321 atgcatccca cacacacacc cacacccaat catgactgac ttgatgaggt tttatctggt
     1381 ctttagtttc ccccatttca gtgcacgtga acgtgacgtg tgtgtaaaga ctgggcccct
     1441 tttcagactt ctgcaggcat gaagagatca tttgttacag cacagtgttg cacagtgagt
     1501 gatttaactg aatatatata tatatatata ttgtgtgaat ggaactagct ttattttgat
     1561 tttactatgc agttcactgt catctcttag gagatttggg tttacagtga tgtgtgtgtg
     1621 agagttggac agtttgtatg tgaatgggtt gttgcaagta ttttgtccct ggtggctcat
     1681 gtaattcagt caggtgctta gtggttttta aaggacgtct ctgcttcatg ttgtcttgct
     1741 aatctttctg caacctgata ggctcggcta tgctctttta atgccaaaca atatactctc
     1801 ttttgctctc ccttaaaggg acagttcacc ccaaaatgaa aattctgcaa tcatttactc
     1861 acccttgttt aaagcctttt tgagtttaca caagaagata ttttggaaaa tgagagtatg
     1921 gaaatcagtg ttttccagca ttcttcacaa tttttgtgtg tgtgtgttta aaagcacatg
     1981 agcgtgagtg aataatgtga attttcaatt gtggctgatc tgtctcttta atgaacttgg
     2041 ttagcgctac cagcagcttt ctgccaaatc tgtgcgcaca caatcttctg ccttgtgtgt
     2101 tttggagttt gctgttcttg tttgctgtca tggttaatat attttgcctg tatttatttg
     2161 atctgctgtg tgaatgttgt tttgttttaa atcatgatat gtgtatgcat ttcctcgcat
     2221 tatggactta aaatgagttt gttgatcttc aaagcactta ctatttaacg ttagatggtt
     2281 ttgtattaaa tatagtttgt taaagtctaa tcagaaatgc gtatagcaat tgaaaatgca
     2341 cttaagatgg atcaaatcca gcccctatgg acgccttgtc ttttttaaag tgaaaatgtt
     2401 gtcattgttt gatcgttagt gaattttaga gtttgaaatg acttgagctt ttgtgtttgt
     2461 tgtgaatgga cagaattggt acaattcaca ctgtccttgc tgtgagtgga tgtttcgtct
     2521 gtgacgccga gttcttgctg tctctcaatg cactgtagtg tctttgtaat ggttgaagta
     2581 aatattcatt ttgaagtaa
//
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