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NCBI Reference Sequence: XM_005163869.5
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LOCUS XM_005163869 2599 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio ataxin 7 like 3a (atxn7l3a), transcript variant X1, mRNA. ACCESSION XM_005163869 VERSION XM_005163869.5 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_005163869.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2599 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="3" gene 1..2599 /gene="atxn7l3a" /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4; wu:fj12f07; zgc:136438; zgc:158566" /note="ataxin 7 like 3a; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 38 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 138 samples with support for all annotated introns" /db_xref="GeneID:368510" /db_xref="ZFIN:ZDB-GENE-030616-253" misc_feature 1 /gene="atxn7l3a" /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4; wu:fj12f07; zgc:136438; zgc:158566" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 284..1315 /gene="atxn7l3a" /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4; wu:fj12f07; zgc:136438; zgc:158566" /codon_start=1 /product="ataxin-7-like protein 3 isoform X1" /protein_id="XP_005163926.1" /db_xref="GeneID:368510" /db_xref="ZFIN:ZDB-GENE-030616-253" /translation="MKMEDMSLSGLDNTKLEALAHDVYSDLVEDACLGLCFEVHRAVK QGYFFLDETDQESMKDFEIVDQPGVDIFGQVYNQWKNKECVCPNCSRSIAASRFAPHL EKCLGMGRNSSRIANRRIASSNNTSKSESDQEDNDDINDNDWSYGSEKKAKKRKSEKN PNSPRRSKSLKHKNGELSGGVNPDMYKYNYSSGISYETLGPEELRSILTTQCGVVSEH TKKMCTRSTLPDADTMLENEAYEPPDGQLIMSRLHWDASSDISPSDSASSKASTNNSE SKRPKKKKPSTLSLTPAGERDKAQERDRIAGSGSSGSSSQNALGLSSRKKRPKLAVPP APSIYDDLN" polyA_site 2599 /gene="atxn7l3a" /gene_synonym="atxn7l3; si:busm1-180g5.4; si:dz180g5.4; wu:fj12f07; zgc:136438; zgc:158566" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 actagtgatg tctgacagga gccaaaatgg cagcgttgtt ttatttccaa acatcatttt 61 ttattcgtgt gacctattca gccaggcgcc taaccgtgtt tgttaaataa cgtttccgtt 121 accttcatac gcacgttttg agtaggtttg ttctctgttg tcgttaacca gaggaacggc 181 tggtttgtga atgaggcaag actggggccg tttagtcttg tgttttccac tcctcctcct 241 cctgttgtca acaatgacag ctcccctacc atagttgctg caaatgaaaa tggaggatat 301 gtctctgtca ggcctggata acaccaagct agaggccttg gctcatgacg tgtactctga 361 cctagtggaa gatgcctgtt tagggctgtg ctttgaggtg cacagggccg tcaaacaggg 421 ctatttcttc ctggatgaaa cggaccaaga aagtatgaag gattttgaaa tagtggacca 481 gcctggtgtg gacatctttg ggcaggtgta caaccagtgg aagaataagg agtgtgtttg 541 tcccaactgc agccggagca ttgcggcctc tcgcttcgct cctcatctgg agaagtgtct 601 cggcatgggc cgcaacagca gccgaatagc caaccgcaga atagccagca gtaataacac 661 aagcaagtca gaaagcgatc aggaagacaa tgacgacatc aatgacaacg actggtccta 721 tggctcagag aagaaagcca agaagaggaa gtcagaaaag aatccaaact ctcccaggag 781 atccaaatcc ctgaagcaca agaatggaga gctcagcggc ggtgtaaatc cagacatgta 841 caagtataac tacagctctg gcataagcta cgagacactg ggacccgagg aactgcgatc 901 cattctgact acacaatgcg gagttgtgtc agagcataca aagaaaatgt gcactcggtc 961 aacactacca gacgctgaca ccatgctgga aaacgaggcc tatgaacccc ctgatggcca 1021 gctcatcatg tcccgtctcc attgggacgc ttcctctgac atctccccat cagactcggc 1081 atcttcaaaa gccagcacca ataactctga atccaagaga ccgaagaaga agaagcccag 1141 cacgctttct ctgactcccg caggagagag ggataaagca caggagcgag acagaatagc 1201 aggcagcggg agcagcggta gcagctccca gaatgctctg ggtctctcaa gtcggaaaaa 1261 gcgaccaaaa cttgcagttc ctccagcacc cagcatctat gatgacctga actaaggcac 1321 atgcatccca cacacacacc cacacccaat catgactgac ttgatgaggt tttatctggt 1381 ctttagtttc ccccatttca gtgcacgtga acgtgacgtg tgtgtaaaga ctgggcccct 1441 tttcagactt ctgcaggcat gaagagatca tttgttacag cacagtgttg cacagtgagt 1501 gatttaactg aatatatata tatatatata ttgtgtgaat ggaactagct ttattttgat 1561 tttactatgc agttcactgt catctcttag gagatttggg tttacagtga tgtgtgtgtg 1621 agagttggac agtttgtatg tgaatgggtt gttgcaagta ttttgtccct ggtggctcat 1681 gtaattcagt caggtgctta gtggttttta aaggacgtct ctgcttcatg ttgtcttgct 1741 aatctttctg caacctgata ggctcggcta tgctctttta atgccaaaca atatactctc 1801 ttttgctctc ccttaaaggg acagttcacc ccaaaatgaa aattctgcaa tcatttactc 1861 acccttgttt aaagcctttt tgagtttaca caagaagata ttttggaaaa tgagagtatg 1921 gaaatcagtg ttttccagca ttcttcacaa tttttgtgtg tgtgtgttta aaagcacatg 1981 agcgtgagtg aataatgtga attttcaatt gtggctgatc tgtctcttta atgaacttgg 2041 ttagcgctac cagcagcttt ctgccaaatc tgtgcgcaca caatcttctg ccttgtgtgt 2101 tttggagttt gctgttcttg tttgctgtca tggttaatat attttgcctg tatttatttg 2161 atctgctgtg tgaatgttgt tttgttttaa atcatgatat gtgtatgcat ttcctcgcat 2221 tatggactta aaatgagttt gttgatcttc aaagcactta ctatttaacg ttagatggtt 2281 ttgtattaaa tatagtttgt taaagtctaa tcagaaatgc gtatagcaat tgaaaatgca 2341 cttaagatgg atcaaatcca gcccctatgg acgccttgtc ttttttaaag tgaaaatgtt 2401 gtcattgttt gatcgttagt gaattttaga gtttgaaatg acttgagctt ttgtgtttgt 2461 tgtgaatgga cagaattggt acaattcaca ctgtccttgc tgtgagtgga tgtttcgtct 2521 gtgacgccga gttcttgctg tctctcaatg cactgtagtg tctttgtaat ggttgaagta 2581 aatattcatt ttgaagtaa //
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