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    Translocon-associated protein (TRAP), alpha subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816651, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Translocon-associated protein (TRAP), alpha subunit
    Primary source
    TAIR:AT2G21160
    Locus tag
    AT2G21160
    See related
    Araport:AT2G21160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26H11.8; F26H11_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (9068252..9070473)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene proline-rich protein 2 Neighboring gene XAP5 family protein Neighboring gene triosephosphate isomerase Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    2. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
    3. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    4. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    5. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084461.1
    NM_127686.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Translocon-associated protein (TRAP), alpha subunit
    NP_001077930.1
    • Translocon-associated protein (TRAP), alpha subunit; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G16595.1); Has 230 Blast hits to 230 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 12; Plants - 58; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
    NP_565498.1
    • Translocon-associated protein (TRAP), alpha subunit; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G16595.1); Has 246 Blast hits to 246 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 24; Plants - 60; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9068252..9070473
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127686.4 → NP_565498.1  Translocon-associated protein (TRAP), alpha subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565498.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P45434, Q94A59, Q9SKP7
      UniProtKB/TrEMBL
      A0A178VTE4, Q5M727, Q8LC49
      Conserved Domains (1) summary
      pfam03896
      Location:26 → 192
      TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit

    2. NM_001084461.1 → NP_001077930.1  Translocon-associated protein (TRAP), alpha subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077930.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IGI4
      Conserved Domains (1) summary
      pfam03896
      Location:26 → 181
      TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P45434.3

    Gene LinkOut

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