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    Ubap1l ubiquitin associated protein 1-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 691572, updated on 9-Dec-2024

    Summary

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    Symbol
    Ubap1lprovided by RGD
    Full Name
    ubiquitin associated protein 1-likeprovided by RGD
    Primary source
    RGD:1582742
    See related
    EnsemblRapid:ENSRNOG00000050979 AllianceGenome:RGD:1582742
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT I complex. Orthologous to human UBAP1L (ubiquitin associated protein 1 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 12.2), Brain (RPKM 11.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ubap1l in Genome Data Viewer
    Location:
    8q24
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (74772794..74792753)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (65877488..65897593)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (70876516..70895723)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit X Neighboring gene programmed cell death 7 Neighboring gene kelch repeat and BTB domain containing 13 Neighboring gene RAS-like, family 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of ESCRT I complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin associated protein 1-like; ubiquitin-associated protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      74772794..74792753
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006243297.4 → XP_006243359.1  ubiquitin-associated protein 1-like

      See identical proteins and their annotated locations for XP_006243359.1

      UniProtKB/TrEMBL
      A6J5E9, M0R9J7
      Conserved Domains (3) summary
      PHA03269
      Location:194 → 345
      PHA03269; envelope glycoprotein C; Provisional
      PRK12323
      Location:161 → 260
      PRK12323; DNA polymerase III subunit gamma/tau
      cd14316
      Location:340 → 376
      UBA2_UBAP1_like; UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins

    2. XM_039082471.2 → XP_038938399.1  ubiquitin-associated protein 1-like

      UniProtKB/TrEMBL
      A6J5E9, M0R9J7
      Related
      ENSRNOP00000066167.3, ENSRNOT00000072939.4
      Conserved Domains (3) summary
      PHA03269
      Location:194 → 345
      PHA03269; envelope glycoprotein C; Provisional
      PRK12323
      Location:161 → 260
      PRK12323; DNA polymerase III subunit gamma/tau
      cd14316
      Location:340 → 376
      UBA2_UBAP1_like; UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins

    3. XM_039082472.2 → XP_038938400.1  ubiquitin-associated protein 1-like

      UniProtKB/TrEMBL
      A6J5E9, M0R9J7
      Conserved Domains (3) summary
      PHA03269
      Location:194 → 345
      PHA03269; envelope glycoprotein C; Provisional
      PRK12323
      Location:161 → 260
      PRK12323; DNA polymerase III subunit gamma/tau
      cd14316
      Location:340 → 376
      UBA2_UBAP1_like; UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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