U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CG34041 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 3885583, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CG34041provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0054041
    Locus tag
    Dmel_CG34041
    See related
    AllianceGenome:FB:FBgn0054041
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BP1033; CG31018; Dmel\CG34041
    Summary
    Predicted to enable procollagen-proline 4-dioxygenase activity. Predicted to be active in endoplasmic reticulum. Is expressed in adult head. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CG34041 in Genome Data Viewer
    Location:
    99F6-99F6; 3-100 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (30508023..30510146)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (26333745..26335868)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene prolyl-4-hydroxylase-alpha SG1 Neighboring gene uncharacterized protein Neighboring gene mir-4908 stem loop Neighboring gene prolyl-4-hydroxylase-alpha NE2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Fork head and Sage maintain a uniform and patent salivary gland lumen through regulation of two downstream target genes, PH4alphaSG1 and PH4alphaSG2. Abrams EW, et al. Development, 2006 Sep. PMID 16914497
    2. A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome. Yandell M, et al. Proc Natl Acad Sci U S A, 2005 Feb 1. PMID 15668397, Free PMC Article
    3. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
    4. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
    5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables procollagen-proline 4-dioxygenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables procollagen-proline 4-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein
    Names
    CG34041-PD
    CG34041-PE
    CG34041-PF
    NP_001034077.5
    NP_001247370.1
    NP_001263110.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      30508023..30510146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001038988.5 → NP_001034077.5  uncharacterized protein Dmel_CG34041, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001034077.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2PDP5
      Conserved Domains (2) summary
      sd00006
      Location:452 → 491
      TPR; TPR repeat [structural motif]
      pfam08336
      Location:260 → 389
      P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region

    2. NM_001276181.1 → NP_001263110.1  uncharacterized protein Dmel_CG34041, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001263110.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KHI9
      Conserved Domains (2) summary
      sd00006
      Location:433 → 472
      TPR; TPR repeat [structural motif]
      pfam08336
      Location:260 → 389
      P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region

    3. NM_001260441.1 → NP_001247370.1  uncharacterized protein Dmel_CG34041, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247370.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      D3DMS2
      Conserved Domains (1) summary
      pfam08336
      Location:29 → 138
      P4Ha_N; Prolyl 4-Hydroxylase alpha-subunit, N-terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KHI9 A0A0B4KHI9
    D3DMS2 D3DMS2
    Q2PDP5 Q2PDP5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools