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    chtb-2 CHiTin Binding domain (ChtBD2) containing [ Caenorhabditis elegans ]

    Gene ID: 184907, updated on 9-Dec-2024

    Summary

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    Official Symbol
    chtb-2
    Official Full Name
    CHiTin Binding domain (ChtBD2) containing
    Primary source
    WormBase:WBGene00017754
    Locus tag
    CELE_F23F12.8
    See related
    AllianceGenome:WB:WBGene00017754
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See chtb-2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    11
    Sequence:
    Chromosome: III; NC_003281.10 (6483218..6489314)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene bZIP transcription factor 8 Neighboring gene ncRNA Neighboring gene putative 26S proteasome regulatory subunit 6B Neighboring gene Serpentine receptor class beta-11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins. Kamal M, et al. Elife, 2022 Oct 19. PMID 36259463, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    CHiTin Binding domain (ChtBD2) containing
    NP_498427.2
    • Partially confirmed by transcript evidence;
      Product from WormBase gene class chtb

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6483218..6489314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066026.3 → NP_498427.2  CHiTin Binding domain (ChtBD2) containing [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498427.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P46503, P46504, Q45EL6
      Conserved Domains (4) summary
      smart00494
      Location:692 → 744
      ChtBD2; Chitin-binding domain type 2
      COG1340
      Location:305 → 620
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      cd16269
      Location:414 → 430
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:303 → 450
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P46504.2

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