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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816199, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT2G16960
    Locus tag
    AT2G16960
    See related
    Araport:AT2G16960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12A24.14; F12A24_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    20
    Sequence:
    Chromosome: 2; NC_003071.7 (7364683..7368963)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene transportin 1 Neighboring gene transportin Neighboring gene Major facilitator superfamily protein Neighboring gene Major facilitator superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001077905.1
    • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: transportin 1 (TAIR:AT2G16950.2); Has 1360 Blast hits to 1320 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 550; Fungi - 387; Plants - 216; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).
    NP_001318234.1
    • ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: transportin 1 (TAIR:AT2G16950.2); Has 1191 Blast hits to 1183 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 517; Fungi - 331; Plants - 200; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7364683..7368963
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084436.1 → NP_001077905.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077905.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETF9, Q1PF58
      Conserved Domains (2) summary
      pfam13513
      Location:72 → 126
      HEAT_EZ; HEAT-like repeat
      sd00044
      Location:22 → 43
      HEAT; HEAT repeat [structural motif]

    2. NM_001335507.1 → NP_001318234.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IMD5, Q9ZVW7
    Nucleotide Protein
    Heading Accession and Version

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