U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PKT4 peroxisomal 3-ketoacyl-CoA thiolase 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839434, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PKT4
    Official Full Name
    peroxisomal 3-ketoacyl-CoA thiolase 4
    Primary source
    TAIR:AT1G04710
    Locus tag
    AT1G04710
    See related
    Araport:AT1G04710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    3-KETO-ACYL-COA THIOLASE 1; KAT1; peroxisomal 3-ketoacyl-CoA thiolase 4; peroxisomal 3-ketoacyl-CoA thiolase 4; T1G11.4; T1G11_4
    Summary
    EC2.3.1.16 thiolase. Its transcript levels change after inducing MUTE expression in a mute background.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PKT4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (1321885..1324840)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene potassium channel beta subunit 1 Neighboring gene PB1 domain-containing protein tyrosine kinase Neighboring gene tRNA-Met Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_100351.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acetyl-CoA C-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    peroxisomal 3-ketoacyl-CoA thiolase 4
    NP_171965.1
    • peroxisomal 3-ketoacyl-CoA thiolase 4 (PKT4); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acetyl-CoA C-acyltransferase activity; INVOLVED IN: catechol catabolic process, ortho-cleavage, protocatechuate catabolic process, ortho-cleavage, metabolic process, fatty acid oxidation; LOCATED IN: peroxisome, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active site (InterPro:IPR020610), Thiolase, N-terminal (InterPro:IPR020616), Thiolase, conserved site (InterPro:IPR020613), Thiolase, C-terminal (InterPro:IPR020617), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039), Thiolase, acyl-enzyme intermediate active site (InterPro:IPR020615); BEST Arabidopsis thaliana protein match is: peroxisomal 3-ketoacyl-CoA thiolase 3 (TAIR:AT2G33150.1); Has 22406 Blast hits to 22392 proteins in 2262 species: Archae - 405; Bacteria - 14105; Metazoa - 1004; Fungi - 662; Plants - 281; Viruses - 0; Other Eukaryotes - 5949 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1321885..1324840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100351.5 → NP_171965.1  peroxisomal 3-ketoacyl-CoA thiolase 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171965.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23014, Q8LF48, Q8LPI4
      UniProtKB/TrEMBL
      A0A178W7T5, A0A5S9SLK1
      Conserved Domains (1) summary
      PLN02287
      Location:1 → 443
      PLN02287; 3-ketoacyl-CoA thiolase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LF48.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools