LOCUS NM_100351 1672 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana peroxisomal 3-ketoacyl-CoA thiolase 4 (PKT4),
mRNA.
ACCESSION NM_100351
VERSION NM_100351.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1672)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1672)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1672)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1672)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1672)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_100351.4.
FEATURES Location/Qualifiers
source 1..1672
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1672
/gene="PKT4"
/locus_tag="AT1G04710"
/gene_synonym="3-KETO-ACYL-COA THIOLASE 1; KAT1;
peroxisomal 3-ketoacyl-CoA thiolase 4; peroxisomal
3-ketoacyl-CoA thiolase 4; T1G11.4; T1G11_4"
/note="EC2.3.1.16 thiolase. Its transcript levels change
after inducing MUTE expression in a mute background."
/db_xref="Araport:AT1G04710"
/db_xref="GeneID:839434"
/db_xref="TAIR:AT1G04710"
CDS 57..1388
/gene="PKT4"
/locus_tag="AT1G04710"
/gene_synonym="3-KETO-ACYL-COA THIOLASE 1; KAT1;
peroxisomal 3-ketoacyl-CoA thiolase 4; peroxisomal
3-ketoacyl-CoA thiolase 4; T1G11.4; T1G11_4"
/inference="Similar to RNA sequence,
EST:INSD:AV831053.1,INSD:EL230536.1,INSD:DR278984.1,
INSD:EG454898.1,INSD:EH809807.1,INSD:BP854056.2,
INSD:BP859071.1,INSD:EG454899.1,INSD:EL985756.1,
INSD:DR278985.1,INSD:BE524191.1,INSD:AV440397.1,
INSD:BE527213.1,INSD:ES194267.1,INSD:EL096596.1,
INSD:BE529379.1,INSD:EL179902.1,INSD:ES002136.1,
INSD:AV814589.1,INSD:DR380590.1,INSD:EL999694.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY099741.1,INSD:AY085052.1,INSD:BT003415.1"
/note="peroxisomal 3-ketoacyl-CoA thiolase 4 (PKT4);
FUNCTIONS IN: transferase activity, transferring acyl
groups other than amino-acyl groups, catalytic activity,
acetyl-CoA C-acyltransferase activity; INVOLVED IN:
catechol catabolic process, ortho-cleavage,
protocatechuate catabolic process, ortho-cleavage,
metabolic process, fatty acid oxidation; LOCATED IN:
peroxisome, vacuole; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active
site (InterPro:IPR020610), Thiolase, N-terminal
(InterPro:IPR020616), Thiolase, conserved site
(InterPro:IPR020613), Thiolase, C-terminal
(InterPro:IPR020617), Thiolase-like, subgroup
(InterPro:IPR016038), Thiolase-like (InterPro:IPR016039),
Thiolase, acyl-enzyme intermediate active site
(InterPro:IPR020615); BEST Arabidopsis thaliana protein
match is: peroxisomal 3-ketoacyl-CoA thiolase 3
(TAIR:AT2G33150.1); Has 22406 Blast hits to 22392 proteins
in 2262 species: Archae - 405; Bacteria - 14105; Metazoa -
1004; Fungi - 662; Plants - 281; Viruses - 0; Other
Eukaryotes - 5949 (source: NCBI BLink)."
/codon_start=1
/product="peroxisomal 3-ketoacyl-CoA thiolase 4"
/protein_id="NP_171965.1"
/db_xref="Araport:AT1G04710"
/db_xref="GeneID:839434"
/db_xref="TAIR:AT1G04710"
/translation="MEKATERQRILLRHLQPSSSSDASLSASACLSKDSAAYQYGDDV
VIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGS
QRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM
TTNPRGWKGSVNPNVKKFEQAHNCLLPMGITSENVAHRFNVSREEQDQAAVDSHRKAA
SATASGKFKDEITPVKTKIVDPKTGDEKPITVSVDDGIRPNTTLSGLAKLKPVFKEDG
TTTAGNSSQLSDGAGAVLLMRRNVAMQKGLPILGVFRTFSAVGVDPAIMGVGPAVAIP
AAVKAAGLELNDVDLFEINEAFASQFVYCRNKLGLDAEKINVNGGAIAIGHPLGATGA
RCVATLLHEMKRRGKDCRFGVVSMCIGSGMGAAAVFERGGGVDELCDVRKV"
ORIGIN
1 gctttacaac gaacggttta gcccagtttg ggcttcaaaa taatcaaacg aaaacaatgg
61 aaaaagcaac ggagagacaa aggatactgc ttcgtcatct tcaaccttcg tcatcttccg
121 acgcctctct ctctgcctca gcttgcttgt ccaaagacag tgctgcatat caatatggag
181 atgatgttgt cattgtcgcg gcacaaagga ctgcactttg caaggcaaaa cgtggcagct
241 tcaaggatac atttccagac gagttgcttg cctctgtatt gagagcattg atagagaaaa
301 ctaatgtaaa cccaagtgaa gttggtgaca ttgtagtggg tactgttttg ggaccaggat
361 ctcagagagc cagtgaatgc aggatggctg cgttctatgc tggtttcccc gaaactgttc
421 ccatcagaac cgtgaacaga cagtgttcat ctgggcttca ggctgttgct gatgttgccg
481 ctgccataaa agctggtttt tatgacattg gtattggagc tgggctggag tccatgacaa
541 ctaatccaag gggatggaaa ggatcagtca acccaaatgt gaagaagttt gaacaagctc
601 acaattgcct tcttccaatg ggtattactt cagaaaatgt agcacaccgg tttaatgttt
661 caagggagga gcaggatcaa gctgctgttg attctcacag aaaggctgct tctgctactg
721 cttccggaaa gtttaaggat gagataaccc ctgtaaaaac caagattgtt gacccaaaga
781 caggtgatga gaaacccata acagtttctg tggatgatgg gattcgacct aacacaaccc
841 tttccggact tgcaaagctg aagccagtgt ttaaggaaga cggaaccaca actgctggga
901 attctagcca attaagtgac ggtgctggag ctgttctcct tatgaggaga aatgtcgcaa
961 tgcagaaagg ccttcccatt cttggtgtat tcaggacatt ttctgcagtt ggtgtggacc
1021 cagccatcat gggggttggg ccagccgttg ccattcctgc tgcagtcaag gcagctggtt
1081 tagaactcaa tgacgtcgac ttgtttgaga ttaacgaggc atttgcatct cagtttgttt
1141 attgtcggaa caagctcggg ctagacgcgg aaaagatcaa tgtcaatgga ggagccatag
1201 ccattggaca tcccttgggc gctacaggag ccagatgcgt tgcgacgctg ctgcatgaga
1261 tgaaacgacg tggtaaagac tgtcgttttg gcgtagtgtc aatgtgtata ggttcgggaa
1321 tgggagcagc cgctgtgttt gagagaggag gcggtgtgga tgagctctgt gatgtccgga
1381 aagtctaatg acaataaggc cttttgacca aggaccctag ctaaggacca aattagaaca
1441 cagtactaca aataaacatt atcacaaata aatgcgttct agatgaataa atcataacga
1501 tagtacaata catgagggaa aacttcttgt tattttttaa ctctcttttg ttatatggtt
1561 ggaatatata cagatactct ttgagaacat atcataatct atttggtttg tcatatgtat
1621 gtacacaatt gtagaactat attattgaat cacgttgcat agtaatgatt aa
//