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    Tmem238l transmembrane protein 238 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102554819, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Tmem238lprovided by RGD
    Official Full Name
    transmembrane protein 238 likeprovided by RGD
    Primary source
    RGD:7617190
    See related
    EnsemblRapid:ENSRNOG00000069550 AllianceGenome:RGD:7617190
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 9.2), Heart (RPKM 8.3) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem238l in Genome Data Viewer
    Location:
    10q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (52148188..52161234)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (51647871..51662206)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (53501858..53513002)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC102554726 Neighboring gene phosphoinositide-interacting regulator of transient receptor potential channels Neighboring gene uncharacterized LOC120095123 Neighboring gene uncharacterized LOC134480699 Neighboring gene transmembrane protein 220 Neighboring gene ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 238-like
    Names
    putative transmembrane protein LOC100289255 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399455.1 → NP_001386384.1  transmembrane protein 238-like

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      Related
      ENSRNOP00000102244.1, ENSRNOT00000114280.2
      Conserved Domains (1) summary
      pfam15125
      Location:13 → 76
      TMEM238; TMEM238 protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      52148188..52161234
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087304.2 → XP_038943232.1  transmembrane protein 238-like isoform X1

      Conserved Domains (1) summary
      pfam15125
      Location:13 → 76
      TMEM238; TMEM238 protein family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials