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Conserved domains on  [gi|2174213353|ref|NP_001386384|]
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transmembrane protein 238-like [Rattus norvegicus]

Protein Classification

TMEM238 domain-containing protein( domain architecture ID 10633467)

TMEM238 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMEM238 pfam15125
TMEM238 protein family; The function of this family of transmembrane proteins, TMEM238; has ...
 13-76 3.12e-16

TMEM238 protein family; The function of this family of transmembrane proteins, TMEM238; has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 61 and 153 amino acids in length.


:

Pssm-ID: 464516  Cd Length: 64  Bit Score: 65.76  E-value: 3.12e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2174213353 13 GRCVFFLIVALLVDAVGLVLLLLGIFAPLNYWDFFVYTGALILALSLLFWLAWYSFNIEVPLEK 76
Cdd:pfam15125  1 GRCKVFFWLAVIFDLVGLTMLLTGIFAPLDFGDFLVYTGALIIFFSLLWWVFWYTGNIEVSLEE 64
 
Name Accession Description Interval E-value
TMEM238 pfam15125
TMEM238 protein family; The function of this family of transmembrane proteins, TMEM238; has ...
 13-76 3.12e-16

TMEM238 protein family; The function of this family of transmembrane proteins, TMEM238; has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 61 and 153 amino acids in length.


Pssm-ID: 464516  Cd Length: 64  Bit Score: 65.76  E-value: 3.12e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2174213353 13 GRCVFFLIVALLVDAVGLVLLLLGIFAPLNYWDFFVYTGALILALSLLFWLAWYSFNIEVPLEK 76
Cdd:pfam15125  1 GRCKVFFWLAVIFDLVGLTMLLTGIFAPLDFGDFLVYTGALIIFFSLLWWVFWYTGNIEVSLEE 64
 
Name Accession Description Interval E-value
TMEM238 pfam15125
TMEM238 protein family; The function of this family of transmembrane proteins, TMEM238; has ...
 13-76 3.12e-16

TMEM238 protein family; The function of this family of transmembrane proteins, TMEM238; has not, as yet, been determined. Members of this family are as yet uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 61 and 153 amino acids in length.


Pssm-ID: 464516  Cd Length: 64  Bit Score: 65.76  E-value: 3.12e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2174213353 13 GRCVFFLIVALLVDAVGLVLLLLGIFAPLNYWDFFVYTGALILALSLLFWLAWYSFNIEVPLEK 76
Cdd:pfam15125  1 GRCKVFFWLAVIFDLVGLTMLLTGIFAPLDFGDFLVYTGALIIFFSLLWWVFWYTGNIEVSLEE 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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